Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00007433 |
| length | 725 |
| lncRNA type | retained_intron |
| GC content | 0.48 |
| exon number | 2 |
| gene id | XLOC_003879 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 6043742 ~ 6048490 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007219 | Notch signaling pathway | biological_process |
| GO:0043114 | regulation of vascular permeability | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0003674 | molecular_function | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060616-96 | Acts upstream of or within Notch signaling pathway and regulation of vascular permeability. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in caveola. Is expressed in vasculature. Human ortholog(s) of this gene implicated in congenital diarrhea. Orthologous to human PLVAP (plasmalemma vesicle associated protein). |
| ensembl_id | ENSDART00000147761 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008449 | lncRNA | downstream | 40332 | 6005807 ~ 6006741 (-) | True | XLOC_003878 |
| TCONS_00008448 | lncRNA | downstream | 82702 | 5957009 ~ 5964371 (-) | True | XLOC_003876 |
| TCONS_00007426 | lncRNA | downstream | 181498 | 5857278 ~ 5865575 (-) | True | XLOC_003873 |
| TCONS_00008748 | lncRNA | downstream | 272171 | 5773096 ~ 5774902 (-) | True | XLOC_003872 |
| TCONS_00008447 | lncRNA | downstream | 483652 | 5556890 ~ 5563421 (-) | True | XLOC_003871 |
| TCONS_00008749 | lncRNA | upstream | 37959 | 6086300 ~ 6096366 (-) | True | XLOC_003882 |
| TCONS_00007440 | lncRNA | upstream | 139041 | 6187382 ~ 6188413 (-) | True | XLOC_003883 |
| TCONS_00007445 | lncRNA | upstream | 156229 | 6204570 ~ 6206556 (-) | True | XLOC_003884 |
| TCONS_00007448 | lncRNA | upstream | 213352 | 6261693 ~ 6262709 (-) | True | XLOC_003885 |
| TCONS_00008450 | lncRNA | upstream | 228559 | 6276900 ~ 6278698 (-) | True | XLOC_003886 |
| TCONS_00007431 | mRNA | downstream | 45228 | 5965168 ~ 6001845 (-) | True | XLOC_003877 |
| TCONS_00007429 | mRNA | downstream | 93425 | 5945186 ~ 5953648 (-) | False | XLOC_003875 |
| TCONS_00007430 | mRNA | downstream | 93437 | 5946767 ~ 5953636 (-) | True | XLOC_003875 |
| TCONS_00007427 | mRNA | downstream | 107212 | 5933635 ~ 5939861 (-) | False | XLOC_003874 |
| TCONS_00007434 | mRNA | upstream | 2946 | 6051287 ~ 6068425 (-) | False | XLOC_003880 |
| TCONS_00007435 | mRNA | upstream | 3690 | 6052031 ~ 6069081 (-) | False | XLOC_003880 |
| TCONS_00007436 | mRNA | upstream | 12194 | 6060535 ~ 6068375 (-) | False | XLOC_003880 |
| TCONS_00007437 | mRNA | upstream | 15692 | 6064033 ~ 6070192 (-) | True | XLOC_003880 |
| TCONS_00007439 | mRNA | upstream | 134339 | 6182680 ~ 6188413 (-) | False | XLOC_003883 |
| TCONS_00007400 | other | downstream | 2093236 | 3953723 ~ 3953837 (-) | True | XLOC_003853 |
| TCONS_00007330 | other | downstream | 4958558 | 1069406 ~ 1088515 (-) | False | XLOC_003806 |
| TCONS_00007326 | other | downstream | 5067325 | 923795 ~ 979748 (-) | True | XLOC_003803 |
| TCONS_00007304 | other | downstream | 5587143 | 459815 ~ 459930 (-) | True | XLOC_003793 |
| TCONS_00007296 | other | downstream | 5695372 | 349113 ~ 351701 (-) | True | XLOC_003787 |
| TCONS_00007438 | other | upstream | 23619 | 6071960 ~ 6072066 (-) | True | XLOC_003881 |
| TCONS_00007441 | other | upstream | 148935 | 6197276 ~ 6206589 (-) | False | XLOC_003884 |
| TCONS_00007456 | other | upstream | 732367 | 6780708 ~ 6782076 (-) | True | XLOC_003894 |
| TCONS_00007463 | other | upstream | 895959 | 6944300 ~ 6948018 (-) | False | XLOC_003898 |
| TCONS_00007477 | other | upstream | 1067906 | 7116247 ~ 7116363 (-) | True | XLOC_003904 |
