RNA id: TCONS_00007427


Basic Information

Item Value
RNA id TCONS_00007427
length 2403
RNA type mRNA
GC content 0.46
exon number 4
gene id XLOC_003874
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5933635 ~ 5939861 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTACGCTGATCATTTAGAAACCAAGGAACCCAAATGGAAGAGAAATAATCGCTTTAATGATCATAGGAAGGTTTTTTTTTGGCTTAAACAAACATGGTGTGGTATAAAGATGTGTATAAAGGAAGACTTGCAGTCTGTTAAACAGTTGAAATGTGAAGATAtccaaaatccaacgtccagcATCAAGGGAAGGCAGCATTGCTGAACACTCTGAGGTACATTTTTGGCAGGAGGAACTGAGTAACCCAGCACatggtaaattaaattaatggaTTAATTTCAATGTGTTTACAGATCCTGGATCAGCCAAACTATGGTGTGCCAGTCCAAATAAGCAGAAAAGCAAGTACTAAACTGTTTTAAGAACCAGCAATGTTTCTTGTTTCCCCAGGTGTTCACCATGCTCACCAGCTTTGTGGACGGAATATTCTGCTGCTTTACAGGGAAGTCTACCAACGTGGTTGTCCCTGTCGAGTCCTCTGAGCCCACAGATGGTTTTGAATTTGTTGAAGTAAAGCCAGGACGAGTTTTGAGAGTTCGACACATCATCCCAGACCGACCTGTGGTTGAGGAGCCAGGGACTGGGGAAGGCGGTACAGTGAGCTGCAAGCGTAAAATCTCAGTGTACAGAAACGGACAGCTTCTTATTGAGAATGTCAACGAAGCCACGCACCCAGAGCTGGTGCGCTATCAGAATGGAGACAGCACTGTGGATATGGAGGTCTCCAACTGTGAGTCTCCTGTGGTAGGCCAGGCTACTGAGACCCCAGCAGGAGGACAGGCTGCAGAAACCAAACCTGCCCCACAGGAACAGCAGCAGGTGCACCGTAGGCGCCGAAAACCCAAACGCTCAATCGTGATCGACTGTGAGCGGAAGATTACTTGCTGCAAAGGTACTCATCCCGACGTGGCTTTGTTTTTCATACACGGCGTTGGGGGATCACTGGATATCTGGAGAAGCCAGCTGGACTTTTTCTCCCAACTTGGATATGAAGTCATCGCCATGGACCTGGCCGGCCACGGTGCAAGCTCAGCCCCTCGCATTCCTGCTGCCTATACCTTTTATGCTCTGGCTGAGGACGTCAGAATCATATTCAAGCGATATGCGAAGCGGAGGAATATTTTAGTTGGACACTCATATGGAGTCTCATTTTGCACCTTCCTGGCTCATGAATATCCAGAACAGGTTCATAAACTTGTGATGATAAATGGCGGCGGGCCCACAGCACTCGAGCCCAGTCTCTGCTCTGTCTTCAACTTGCCCACATGTGTCCTTAATTTTCTGTCCCCGTGCCTCACCTGGAGCTTCCTCATGGCTGGGTTTGCCCATCAGGGAACAAGGGAAAAGAAATTACTGAAAGAGAACAATGCCTTCAACGTGTCTTCCTTCGTTCTGAGGTCCATGATGAGTGGACAGTACTGGCCGGAGGGTGACGAGGTTTACCATGCTGAAATCACAGTGCCTGTTCTGCTGGTTCACGGCATGTATGACAAGTTTGTACCAGTTCAAGAGGACCAGCGCATGGCAGAGATCCTCTTGCTGGGTTTCCTGAAGGTTCTGGATGACGGAAGCCACATGGTCATGATGGAGTGTCCTGATGTAGTCAACACTCTGTTACACGAGTTCTTCTTGTGGCAGCCAGCAACCGCCTCAAAGCCCAAACAGGAAGCAGCGCCGACAAAGACCAACACCAAATCTCCAGAAGACACATCCAGACCTAAAACTGCCCCGAAATCACCCTCCAAATCTCAACCTGATTTGCTAAGACCGACAACTGCACCTAAAACAACCAACATCGCCACAGAAGCCCCGGCAGTAGCGGACATCAAATCTAAGGGCAAGAAATAACTGCTTTTCCCAATATACATGTGCTGGGGTAAAGCATTGGGCTCGTGTGATAGAACAAGTTTAATGGAGCTTTCTGAACATTGGATATCACTGGATATTCACCAGctggtttaaaacagttggtCTAAAAGCACGAGGGTCTACTTTAATAATTCCAGTTTTGGAGCAGGATGATTCCTAGAGGTTGTCTTCTTTTCTGTGACACAGTCCTTTCCAAGTGATTTTTATTTCTACCATGGGATATTATATATACTTGTATGCCATATGATGTCAATTTTAAGGCTGAAAATGTCACATTACATAAGGGATGAATATAAGCACTGCTGCCGCTGTTGAATCTAATAgactaatattttgtatttatttatgccagtttttttttttatttgactacATCAGCTGATGTCCATCAGTTCATACATGGGTCTTCCTCTCTGTTAAAGTTTTATTTGAAACGTTCATTAGTGAAGTGTTTTTACGTTCAGATGACTCCAGCACTGTTGCTGAAATACTGTCAGATACGGTGACTTTACAATAAAAGCCATCAACTTGA

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-805 Predicted to enable catalytic activity. Orthologous to human ABHD8 (abhydrolase domain containing 8).

Ensembl:

ensembl_id ENSDART00000110033

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007426 lncRNA downstream 68060 5857278 ~ 5865575 (-) True XLOC_003873
TCONS_00008748 lncRNA downstream 158733 5773096 ~ 5774902 (-) True XLOC_003872
TCONS_00008447 lncRNA downstream 370214 5556890 ~ 5563421 (-) True XLOC_003871
TCONS_00008747 lncRNA downstream 418471 5514378 ~ 5515164 (-) True XLOC_003870
TCONS_00008745 lncRNA downstream 1001636 4786977 ~ 4931999 (-) True XLOC_003868
TCONS_00008448 lncRNA upstream 17148 5957009 ~ 5964371 (-) True XLOC_003876
TCONS_00008449 lncRNA upstream 65946 6005807 ~ 6006741 (-) True XLOC_003878
TCONS_00007433 lncRNA upstream 107212 6047073 ~ 6048341 (-) True XLOC_003879
TCONS_00008749 lncRNA upstream 146439 6086300 ~ 6096366 (-) True XLOC_003882
TCONS_00007440 lncRNA upstream 247521 6187382 ~ 6188413 (-) True XLOC_003883
TCONS_00007425 mRNA downstream 67891 5855923 ~ 5865744 (-) False XLOC_003873
TCONS_00007424 mRNA downstream 370137 5554163 ~ 5563498 (-) False XLOC_003871
TCONS_00007422 mRNA downstream 1146552 4492467 ~ 4787083 (-) False XLOC_003868
TCONS_00007423 mRNA downstream 1337204 4594475 ~ 4596431 (-) False XLOC_003868
TCONS_00007420 mRNA downstream 1631384 4296726 ~ 4302251 (-) True XLOC_003863
TCONS_00007429 mRNA upstream 5325 5945186 ~ 5953648 (-) False XLOC_003875
TCONS_00007430 mRNA upstream 6906 5946767 ~ 5953636 (-) True XLOC_003875
TCONS_00007431 mRNA upstream 25307 5965168 ~ 6001845 (-) True XLOC_003877
TCONS_00007432 mRNA upstream 103881 6043742 ~ 6048490 (-) False XLOC_003879
TCONS_00007434 mRNA upstream 111426 6051287 ~ 6068425 (-) False XLOC_003880
TCONS_00007400 other downstream 1979798 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 4845120 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 4953887 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 5473705 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 5581934 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007438 other upstream 132099 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 257415 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 840847 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 1004439 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 1176386 7116247 ~ 7116363 (-) True XLOC_003904

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_03887278_03892054.mRNA False 1968 mRNA 0.50 9 CI01000057 3887203 ~ 3892054 (-)