XLOC_003882


Basic Information

Item Value
gene id XLOC_003882
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6086300 ~ 6096366 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008749
CTGCCTGTAGTTCTCTTAGGATGGAGTGGTTTCGAGGACCAGGAATTCCCCCTCCACCTTCAATTTTTGCTAGATTTTCAGCAGTTCTCTGCAAACAAGACCAGCTTAGTCTCTTTTAAATTGTTTCACAAACAATGTATATCTGTGAATATAATCCTGAACACTGTATTAGCATTCGCTTCATAGATCAGAGGAGGCTGTTGGGAGTGAATGTAAATGTCACATTCTTTTGACTTTCCCTGCAAAAATGTCCCTGGTCAATCAATGCAGGGGTGTTCATCAACATTGGAAGTCCGAAAAGGTCAGGAAGTTTCATTACAAGCAGGAAGCATAGCATTTTGAGACCATGCAAACATTCCTAGACCCCTAAACCAGCTGTGTTCCATCCTGcacctggagggcacctttcagAAGAATTTAGCTCTACTCCTAATTAAACATGAATAAGTTGATCAGGTTTTTCAGTAACACCAGAGAGATTTGCTGAAGCTACAGGAAACCGTCAATGAGGTTCTGCTGGCTTTAATATGGTAAATCATCAGATTCTCCTATCCACCCTCTCTTTTCTGGATATTATTGGAACCTTGCACCGCTGGTTTGTATTGTCAAAGTATATTTTCAAAACAGGCTCAAacaaacttgagatgcagagtggagttgaccgcaACCAccgggtttgagtctggcgaagaacccCGAAaagcagaaagcagTCTCAGCCTGAAGGACAGAATCGATGGTGCTGGGAGGCAACGGGGAGTCTGGCCTGGAGCTGGGTAGTTTGCGGGACAGCAGAGGCGATCCGGGATATGAAGGAGAAGAAAAACAAGGACTCGAAGTTCGGCTGGAGGACAATGATGGACTGACAGGAGGAGAACAGCTCACTCCATACAGCCATTTCCTCTTCAGATCAACCACCTGCCAAAGGATTTGTTTGGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008749 True 939 lncRNA 0.45 2 6086300 6096366

Neighbor

gene id symbol gene type direction distance location
XLOC_003881 CT573239.1 coding downstream 14234 6071960 ~ 6072066 (-)
XLOC_003880 babam1 coding downstream 16108 6051287 ~ 6070192 (-)
XLOC_003879 plvapb coding downstream 37810 6043742 ~ 6048490 (-)
XLOC_003878 NA coding downstream 79559 6005807 ~ 6006741 (-)
XLOC_003877 ano8b coding downstream 84455 5965168 ~ 6001845 (-)
XLOC_003883 ccl44 coding upstream 86314 6182680 ~ 6188413 (-)
XLOC_003884 pole4 coding upstream 100910 6197276 ~ 6206625 (-)
XLOC_003885 ccl25b coding upstream 162682 6259048 ~ 6265723 (-)
XLOC_003886 NA coding upstream 180534 6276900 ~ 6278698 (-)
XLOC_003887 NA coding upstream 220288 6316654 ~ 6324557 (-)
XLOC_003938 BX324177.10 misc upstream 5242438 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 5271228 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 5274089 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 5284538 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 5287467 11383833 ~ 11384130 (-)
XLOC_003876 NA non-coding downstream 121929 5957009 ~ 5964371 (-)
XLOC_003872 NA non-coding downstream 311398 5773096 ~ 5774902 (-)
XLOC_003870 NA non-coding downstream 571136 5514378 ~ 5515164 (-)
XLOC_003891 NA non-coding upstream 333607 6429973 ~ 6431348 (-)
XLOC_003893 NA non-coding upstream 358668 6455034 ~ 6456300 (-)
XLOC_003894 BX936438.1 non-coding upstream 684342 6780708 ~ 6782076 (-)

Expression


Co-expression Network