XLOC_003876


Basic Information

Item Value
gene id XLOC_003876
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5957009 ~ 5964371 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008448
CAATGATTCAGCGATCCATTCATATAAATCAAGGGTCACCATATGCTGAATTTATAAATGGATCAACTtctacatgaatgaatgaatcattgaatcactCATTAAGATAATGAATTGCTGTCTACTGGTGGTTTtccaggataaaaaaaaaaaaacattcagaaaaatcctgtttaataatcatttttgaAAAAGCCAATGTTGTTAGTATCACACACCTCTTGTGGAAAGTGTGCGCAGACCTCAGAAGTcatgccaacccaggctcattctgaatacgtaccgctgtatacatttctggcgagcgccaaatatgtcccagaaggtatgtttttttgcagtttttgttttcgtgaatccaccagaggccgctgtgtacacttctTGGATCTTAAATTCCTCACCCGAGTGCCATTCACTCCTGCTCGTCTCACGTAAATGCACCAGAGcacgctgtcgactgactgactaccTGACCAACTGAGCGATCACCCCAcccacctaaacccaactgagTTTTAAAATCCACTGATTGGCCAGTGCCCTcccacttccctgaacccaactgactaactgactgactttTTACCTCCATGCGGATGACTTTTTCatggttaccagtttgtccagtagcttgccatgtatgtcagAGGATTTGAaacgcagagcggagttgaccaagACGACAAGTTTTGAGTCCGGCAATGGTCCCAGTGaacatgtaaaacaaaaaaaaagtcaaaatattaaataaagaagtaaataacatggtgagaatgtggtaaaatcagaaaacCAGGCTACCActaaggcttttctttttctggattgcttcaGATCAGTTTGGTTCAGTGAAGGAGGAGGGTTGGTCGaatggtcagtcagtcagttgacagcagcctctggtgaatttacgagagaacagcaggcgccaatgtcactcacgagagaaattggagatctcaaaaagtgtacacagcgtcctctggtgcattcactaaaacaaaaacttaaaaaaaacataccctctgggatgtatttgacgctctccagaaatgtatataggggtacattttcagaatgagtagGGTTGAAGCTTGTTTAATaaccattattaataaaaactaatgtTGTCAGTATAGCACACCCCTAATGGACAGTGCGCTCAGACCTCAAAGGTCATGCAGACTGTCTGCAAACCGGAGCAGAATGCGGACTAGAGAAGTTTACTTACAATACACCGACAAAGTGTTGTGCAATTTGCACGCATTGCGTTATTTTAGTACCTGAttctttaaagaaaatcaatCAGGCTACCATGTTATTAGTGACGTTACTTGCACCTTAATTCAAGAGAATAGCTGATACACAGCAGACGGTAAAATCCTCACAGCAGGAACTTATCAAAAATATTAGCTAGCTGCATTCACAGCAGGAAAATAGTAGCATCTggtctaaaatataaacatgttttCCGTCAACATCATTCGTCAGTATGGTTGTATCATGCGCTGCATTTGTGTAGAAAGTGAGTTGacgaataaataatgaaaatggcGTCATTTAAATACGCATGGCGCAATGATCTATCACCGCGTACAGAAGCTGGTGCAGTTAGATCGAATAACAAGGCGCATAGTTTTGTTCAGAAACGGCACACGCTACAGTGGTGCTACTGATTAGTGAATTCACCCCGTAACGGTTAATGCTTTGCTATCTTTCCGAAGAAATTTGTAGAAAAGGCCCCCCTCCAGTCAACACACTTCATCACACACACATTGCCTGCAACCCAAATAGAAATGCATGAGCTGCGTTTCTGATGGTGTCTAAAGTGCAATGTTTAATTGCTAGCCTGataattgtaacattttattgGGTTCTCAGtagaaaaaaagcaacaaatcagcTACTACACGTTTTATACCAATCAGTACAACCTTCAAAGTATAATAACCGCACAATAAGCAGTTCCAGCTATGGCTGATTTTAGGTCTAAAAACCTTTTGTTAACAGCTGGTGTGTAGAGCAATAGCAACTTTACAAGCAAAAACTACTGATGGTCTAATAAGTCCATATCGAATAACAGGCCCTGAATGGCAATATCTTCATGTTATTTAATAAGTGAAAAAAATCTGTAATGAAAACTGCTGCCGATATTCGTCGGAAATTTCTATATCCTTTCTCTGTTGTGAAGCGCTGTATACGAAGGCAGGAGAAAAGGCCAGATGAAACATGTCATGAACATTCGCCTCATCTCCTGAATTTGGTTGTTACTCGTCACATTGCCACTTATTCCTCATAATTAAAGCTCTGTTTTGAAGCTTCGAGCAGATATATTAATCACTGTGCAGACTTTAACCCCTCGTTAATACTTTAACTCACTGCTGTGTAGATGCAGCTTGACAGAAAACCAGACGGAAAGATGATATTTCACACAGCTTCAGTCAACTGTTTGGACAAACTAAAAAGGGCAGGAGCCTAAAGTGCTTGAATCTGCGCTACAGATACATGCTCACCTtggatttataaggttctatctgacatttcagtcaattatttttattttctgacaacttatttttaatatatggtGTATTTTTAGGTAGTGTACATTTTGGAACTTTTATTAGGCAAACAGTCGgcgtgaaatcaaaatttactcatcttatttttatatgtatatagtagtgcttgttataaacgATGTATCGGggcactttattattttgtaaaaggTATTTGCTCTCATAATCTTTAAACAAATACAGTAACCTTCCCTCCTCCCTCGAAACGACTTTTAttctatcagtactttagggcagagctatctgATTTTAGGGCGGGGCCATcggtaatttagggcggggctatcagtttaGGGCAAAACTATCAgttttttagggtggggctatcagtgctacAGGGCAGAGCCATCAGGGTTTttttttagggcggggctattagtactTTAGGGCAGAGCAATCAGTTTTTTAGGatggggctatcagtactttaggacAGAGCTATCTGTTTTTTAGGGCAGGGGTATCAGTAAATTTAGGGCAAGGCTATCAGTGCTCTATGGCAGAGCTATCAGTtttttagggcgggtctatcagatCTCTAGGGCAgtgctttcagtcatttagggcggggctatcagtactttagggcagagctatcagttttttagggcggggctatcagtattttaggggcggggctatcagtgctctagggcagagctatcagttttTTAGGGCCGGGCTATTAGTACTTTAGGGCAGAACTATCTGTttttttagggcggggctatcagtgctctAGAGCAAAGCTATCAAttttttagggcggggctatcagtcctctaGGGCAGTGCTTTCAGTCacttagggcggggctatcagtaccTTAGGGCAgtgctttcagtcatttagggcggggctatcagtaccttagggcagagctatcagtttttttagggtggggctatcagtactttagggcaggGTTTTTAATCCtctagggcagagctatcagtcatttagggcggggctatctgtactttagggcagggctaaCAGTGCTTTAGGCTGGGGCTTTTAGCTCTTTAGGGCGGGGATATCAATCCTCTAGGGCAgaactatcagtcattaagggcggggctatcagtcctctaGGGCAGAACTATCAGTcaattagggcagggctatcagtactttagggcagggctaaCAGTGCTTTAGAGCGGGGCTTTTAGCTCTTTAGGGCTGAGCTATCAGTTCATGTCTTATTTCTGCGTGGGAAGCAGTGGTTAATACAATTATGATTCAATTCCATCTGTAAACTTTAGCTCCTCGTTCTCTTGATCATCAGGCATCTGAAAACATTCTACATCACAGGATGCAGATGGTAGACAGTAATCTTTCACAACTGGgtacaaaattacatttaaatcttCCTCCATTTTGTTAGAAATGCCCATCTTCCAACGATCCAATCGGTAACCAAAGAGCGAATTCATGCACATTTCAGAAAATTTCAGTTGGAAGTGTGTTACAATAATTGAAAAAAGGACAATCTTACCTTTGATTCCACGTCGACTTTAAAGCTCAGTATCTCAAAACCACTCAGCAAGCAGAGAGAACCTTATATTTGCAAAATGgcaaaatcttcttttttttaaacatgaatttGAAAGAGCTCGTACCCAAATTTGTATAATTGCATAGTCCGCTTTACAGTTAttctaaaatgtgtaaatgtgtaatAACAAGTTTCCACATTTTGAGTAGGGTTGTATGACTAATGTCTGTGCTAATTCTTTACAGAGCTAAGCCTCATTACTGTCCCAGTTGTGCACATAATAGTTGTAAGTGTATATCATTTTAGCTACTCTCTTCGCTTTTTTAATGTTCAGCATTTGTTGCcaactttaattaatttattcatgccTAGCTATTTATAGAATCGTCTTTTTTTACTGAGGTAAAACTAATACATGCCTCCACTTTGCACATTATTTCAGTGTCAAGTCATATTTTACCGTAAAGCTGCTAAGCACTTTTGCTTTGGAAATGTGAAGGAAAACATAAACGTTCACAATCAAACTGTCTCCATCTTTAAAGACAGTCTGAATGTGCGCTTTTGAAAGAATGACTGGTTTTCCTGCAGCAACGAAGGCAGGTTGTTATCTGGAAAGGGATGTTGCTATCACACGAGCCGCAGAGTGAAGGGTTTCAGTGCAGCAGCTGAATCTGTGTgaagagaatgagctgtttatgTTCCAGCGTGAGGTCAGGAAGAAACGAGAGGTGCctcaagtaataaaatattacgtttttattactttttattttcatacACAAGATACAAACTATGCATTTATTCCTTATTTTGTTGACAGCAGGTTGTTGCAATAATATTTCGACCTGAATAGCGGTTTGAACCCGTGTTCTACATTCAGTTGGTACTTGTTTACGAGGCCCTTCATTACGGTTATCAGATGTTTTTCCATTATTTGATTGCATTGACAAGTTCATCCATTGTTACACAATTACACATTGTTCCTGCTCTCAAAAGATTATGtttgctgctttttcaaactacatatttaaaataagctgaaacgacacaattcttgacttttttttgggacaacttaattgttttatgttcaattcacttagatttttttatgttaacttaataggtttgtgtggaaccctgcatttttacagtgtaacctgACAGCAGTATTCGTCTTTTCTCCACTCAATATTAATCGCATTATATCTAATATGCATTGCCTTTGTTCATAAAGTGACTTGAACATAAAATTTGAATGAAATTAATGGATGTGTTACATTTGCACTCGTTTTCATTTGCATTtcgtttgtttgcttgttttttgtgaccctggaccacaaaatcatTTGCTTTTTTTTGGGAATAGTTTGTTCTTTTAAATCCccaacatacataaatatatcaaaatgtaatatgcagaCGTGCTATGTCAGTGATTTTATCGATATTTCGTTTTTTAACACTTAGATTTCACATTTTCAAGTAgttgttcattatttttttttttttttcggcttagtccctttattaatcaggggtcgaaACAGTGGAAttagccaccaacttatccagcatgtgttttacacagcgaatgcccttccagccacaacccatcactgggaaacatccaaacacttctGCATTCAcgcacaaacactacggacattttagcttattcatttgacctatactgcatgtccttggactgtgggggaaaccggagcacccggaggaaacccacgcaaacacggggagaacaatttcacacagaaacacaaactgacccagctggggtgttcgaaccagcaaccttcttgctgtgaggcgatcgtgctacccactgtgccaccttcaAGTAGTAGTATCTCAGTCAAATATTATCCAATCCTAACAAAGCATAcaccaatggaaagcttattcACGTAAAGCTTAGGAATTGACACTTGTGTAGTCCAGGGTcgcaaaaaaaattaagatgtcAAGAACTTAGCTGTCCCTTCAGTAACAGCTGCAATCACATCTGGAAACCAGCTGTCTGTCAACTACGATTTGCCTGTGCGTTTTATTTGTTATGAACTTCATTTGATTCACCCAGCAGGctcaggatgtcaacatgacatcaaattgacgttgtaccccaatgtcgtgggactttgcattttgtttggaaatgaaaatcgggttgacatcagaacccaacatcaggttgACATAATTCCGATGTCGGACAGATGTTGcgttttggttactttccaaccaatatgacgtctatcagacgttggattttgatacTTGACGAATTAATGtctgtatttgatgtcaatatgatgttggtttaagatgttggctcgacgttggattttggtcactttccaacacaacctaaaatcaaccaaatatcaccatctaatgatgttacagcttgaagttgtgtggacattaccaccaTGACagctatcagatgttggattttggttgccatacctgatgaataaatgtctgtttttgatgtcaatatgacgttggtttaagatgttggatttgGCCACTTTTAATgcgacctaaaatcaaccaaatatcaacgtctgatgatgttacagcttgactgtgtggacgttaccactatgacgtctatcagacgttggctTTTAGTTACCATACCTGACAAaataatgtcagtatttgacgttgatatgacgttggtttaggatgttggatttcggtcactttccaacacaatatcaacgtctaatgatgtgaCAGTTGATGTTGTGATGACGTTACCACTataacatctatcagatgttggattttggtatATTTTGCCATATACTTGTCGAATAAATGTCTGTTtttgatgtcaacatgacgttggtttaagatgttggatttgGCCACTTTTTaatgcaacctaaaatcaac

Function

GO:

id name namespace
GO:0072068 late distal convoluted tubule development biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0009893 positive regulation of metabolic process biological_process
GO:0031325 positive regulation of cellular metabolic process biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0072025 distal convoluted tubule development biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008448 True 7011 lncRNA 0.40 2 5957009 5964371

Neighbor

gene id symbol gene type direction distance location
XLOC_003875 dda1 coding downstream 3361 5945186 ~ 5953648 (-)
XLOC_003874 abhd8b coding downstream 17148 5933635 ~ 5939861 (-)
XLOC_003873 gamt coding downstream 91265 5855923 ~ 5865744 (-)
XLOC_003872 NA coding downstream 182107 5773096 ~ 5774902 (-)
XLOC_003871 pex11g coding downstream 393511 5554163 ~ 5563498 (-)
XLOC_003877 ano8b coding upstream 797 5965168 ~ 6001845 (-)
XLOC_003878 NA coding upstream 41436 6005807 ~ 6006741 (-)
XLOC_003879 plvapb coding upstream 79371 6043742 ~ 6048490 (-)
XLOC_003880 babam1 coding upstream 86916 6051287 ~ 6070192 (-)
XLOC_003881 CT573239.1 coding upstream 107589 6071960 ~ 6072066 (-)
XLOC_003938 BX324177.10 misc upstream 5374433 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 5403223 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 5406084 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 5416533 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 5419462 11383833 ~ 11384130 (-)
XLOC_003870 NA non-coding downstream 441845 5514378 ~ 5515164 (-)
XLOC_003868 NA non-coding downstream 1025010 4492467 ~ 4931999 (-)
XLOC_003869 NA non-coding downstream 1104861 4809715 ~ 4852148 (-)
XLOC_003867 NA non-coding downstream 1486335 4435273 ~ 4470674 (-)
XLOC_003882 NA non-coding upstream 121929 6086300 ~ 6096366 (-)
XLOC_003886 NA non-coding upstream 312529 6276900 ~ 6278698 (-)
XLOC_003887 NA non-coding upstream 352283 6316654 ~ 6324557 (-)

Expression


Co-expression Network