XLOC_003878


Basic Information

Item Value
gene id XLOC_003878
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6005807 ~ 6006741 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008449
acaattttTACTAACagtccacagatttgagttttgaagaactacattctcgcatgaaaaagtgttaaaactttatttcattacatattacaagcaatatttataatattatgtgccttctcatccaccattacagcttgatgcagcttggtgcgaaatgaatcctgggaggaaaaaataataattctcaatacactccaaacgaactttattcttattgttaaagtcagagatatgtaatattttgaatggctaagaaaataattaactttatatttcaatcaatatattactcttgcactgcttcggttcaggactcgtgtgacattgaatcagattcagatattttatcagacgtgttcatgagctcttagtcatcaacaagcaattcgtgtacaagcagtacacggaccaagcaatatgatgaaatattaatgaattatatgtttgcgtcttacaatattatacaaaacggaatcgttttcaggcgaattcgactctttactgttcacttaaaggagccgaattcgactctttactgttcacttaaaggagccgattcattgaacagaactgactcgactcgaccgcaaacaagcgccatcaccacagacaacgccgtcgtctcttcacccaacggattcatcctcgtacaagactga

Function

GO:

id name namespace
GO:0007417 central nervous system development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008449 True 662 lncRNA 0.36 2 6005807 6006741

Neighbor

gene id symbol gene type direction distance location
XLOC_003877 ano8b coding downstream 3962 5965168 ~ 6001845 (-)
XLOC_003876 NA coding downstream 41436 5957009 ~ 5964371 (-)
XLOC_003875 dda1 coding downstream 52159 5945186 ~ 5953648 (-)
XLOC_003874 abhd8b coding downstream 65946 5933635 ~ 5939861 (-)
XLOC_003873 gamt coding downstream 140063 5855923 ~ 5865744 (-)
XLOC_003879 plvapb coding upstream 37001 6043742 ~ 6048490 (-)
XLOC_003880 babam1 coding upstream 44546 6051287 ~ 6070192 (-)
XLOC_003881 CT573239.1 coding upstream 65219 6071960 ~ 6072066 (-)
XLOC_003882 NA coding upstream 79559 6086300 ~ 6096366 (-)
XLOC_003883 ccl44 coding upstream 175939 6182680 ~ 6188413 (-)
XLOC_003938 BX324177.10 misc upstream 5332063 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 5360853 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 5363714 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 5374163 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 5377092 11383833 ~ 11384130 (-)
XLOC_003872 NA non-coding downstream 230905 5773096 ~ 5774902 (-)
XLOC_003870 NA non-coding downstream 490643 5514378 ~ 5515164 (-)
XLOC_003868 NA non-coding downstream 1073808 4492467 ~ 4931999 (-)
XLOC_003886 NA non-coding upstream 270159 6276900 ~ 6278698 (-)
XLOC_003887 NA non-coding upstream 309913 6316654 ~ 6324557 (-)
XLOC_003891 NA non-coding upstream 423232 6429973 ~ 6431348 (-)
XLOC_003869 NA non-coding downstream 1153659 4809715 ~ 4852148 (-)

Expression


Co-expression Network