XLOC_003871 (pex11g)


Basic Information

Item Value
gene id XLOC_003871
gene name pex11g
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 5554163 ~ 5563498 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007424
TGACTTGATAATGAGTGACGCTTTCCTGTACAAAGTCCACTGACTTCACGAAagactgctgttaaaaaaaaagattaattttgagccagtttaaaaaagcaaacttgctttttatatgatttatatttttacatcctGTATGTAGATGTTCAGCGCCACATCATTGGCTTCTGCAGATGACAATTAAACAGACAAATCATGCAGAGTTCAGTCGAGTCCTTCATAACTGTGCTGGAGTCATACAGAGGAAGAGACAAAGTGATACGGACCCTCTGCTATGGCTCTCAGCTGGTAGGGGGTGTCCTGTCAGGAAAGAGCCCTCAGTCTTCATTGGGAAAGAGTCTCCTGCTGTTCTCAGCTCAGTTGAGTCACTGCAGAACCACACTCAGGCTCTTTGATGACCTGTCTATGCTGGCGTACTCCTCTGGCTATGGATTAGGAGGCTCGGAGGAAGATGCTCGGGTGCGCTGGATGTCTGTTCTGAGTAACGTAGCTGATCAGTTGTATTATCCCTGTGAGCACATCGCCTGGGCCGCAGATGCAGAGCTCATCAAAACTAAATCTGACCGCTGGTGGGTGCTGAGCACAGGCCTCTGGGGTGCATCGCTGGTCCTCGGCATACTCAGATCCATTAGGTCTATCCTGATTCTGAAGCGAAAAGCACAGAAGTGTCACAGATCAGGTTCAGCTGAGAGCAGGGAGGAAGTGTTTTCTCAGAAAGCTGCGCTGAAGAGGCAGATCAGAGCTGAGCTGTTCAGCATCCTGAGTAGTTCAGCTGATCTCTGCAATGCCGTTCACTGGATGCCGCCGGGATTTCTGTGGGCTGGACGCTTTCCTCCATGGCTGGTGGGACTGATGGGAACGGCCTCATCACTGATAGGCCTTTTACAGACGAGCTCTGCTGATCAAGGAGCATCTTAGTGAACTATTACACTGCAAAGAAATGCTTACTTttgattttgtcttgtttctacgtcaagtatttaaatattcttatatcaagaagcactTTTTAGACAGTATTTTTTGAAGTagagtcaaaattaagtggagttttacttaaaacaagcaaaataatctgctggggtccgttcttcgtacctcgcttaaatgatctaagatgatttggcagatcctggatcttttcatctcgataactcatctctcgctaatttggttcttcaaacaagttcgcgaatcagattagaatgtctggatgaactgatctgagatcgctgcatgtgtcgtgaaggactgatctatcgatcc
>TCONS_00008447
attttgagccagtttaaaaaagcaaacttgctttttatatgatttatatttttacatcctGTATGTAGATGTTCAGCGCCACATCATTGGCTTCTGCAGATGACAATTAAACAGACAAATCATGCAGAGTTCAGTCGAGTCCTTCATAACTGTGCTGGAGTCATACAGAGGAAGAGACAAAGTGATACGGACCCTCTGCTATGGCTCTCAGCTGGTAGGGGGTGTCCTGTCAGGAAAGAGCCCTCAGTCTTCATTGGGAAAGAGTCTCCTGCTGTTCTCAGCTCAGTTGAGTCACTGCAGAACCACACTCAGGCTCTTTGATGACCTGTCTATGCTGGCGTACTCCTCTGGCTATGGATTAGGAGGCTCGGAGGAAGATGCTCGGGTGCGCTGGATGTCTGTTCTGAGTAACGTAGCTGATCAGTTGTATTATCCCTGTGAGCACATCGCCTGGGCCGCAGATGCAGAGCTCATCAAAACTAAATCTGACCGCTGGTGGGTGCTGAGCACAGGCCTCTGGGGTGCATCGCTGGTCCTCGGCATACTCAGGTGAAGGCCGAGAGCAGACAGGACAATatgtacatatactgtatacacagtCTTGTGGAAAAGTTGCCACATTCTATTAAATCCAATGGTTTTCTGTATTAGTATGTAACaata

Function

symbol description
pex11g Predicted to be involved in peroxisome fission. Predicted to be located in membrane and peroxisome. Predicted to be integral component of peroxisomal membrane. Predicted to be active in peroxisomal membrane. Orthologous to human PEX11G (peroxisomal biogenesis factor 11 gamma).

GO:

id name namespace
GO:0016559 peroxisome fission biological_process
GO:0005779 integral component of peroxisomal membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-79 Predicted to be involved in peroxisome fission. Predicted to be located in membrane and peroxisome. Predicted to be integral component of peroxisomal membrane. Predicted to be active in peroxisomal membrane. Orthologous to human PEX11G (peroxisomal biogenesis factor 11 gamma).

Ensembl:

ensembl_id ENSDARG00000025559

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007424 False 1269 mRNA 0.45 5 5554163 5563498
TCONS_00008447 True 663 lncRNA 0.47 3 5556890 5563421

Neighbor

gene id symbol gene type direction distance location
XLOC_003870 NA coding downstream 38999 5514378 ~ 5515164 (-)
XLOC_003868 NA coding downstream 622164 4492467 ~ 4931999 (-)
XLOC_003869 NA coding downstream 702015 4809715 ~ 4852148 (-)
XLOC_003867 NA coding downstream 1083489 4435273 ~ 4470674 (-)
XLOC_003866 NA coding downstream 1200730 4350478 ~ 4353433 (-)
XLOC_003872 NA coding upstream 209598 5773096 ~ 5774902 (-)
XLOC_003873 gamt coding upstream 292425 5855923 ~ 5865744 (-)
XLOC_003874 abhd8b coding upstream 370137 5933635 ~ 5939861 (-)
XLOC_003875 dda1 coding upstream 381688 5945186 ~ 5953648 (-)
XLOC_003876 NA coding upstream 393511 5957009 ~ 5964371 (-)
XLOC_003938 BX324177.10 misc upstream 5775306 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 5804096 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 5806957 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 5817406 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 5820335 11383833 ~ 11384130 (-)
XLOC_003878 NA non-coding upstream 442309 6005807 ~ 6006741 (-)
XLOC_003881 CT573239.1 non-coding upstream 508462 6071960 ~ 6072066 (-)
XLOC_003882 NA non-coding upstream 522802 6086300 ~ 6096366 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01099603_00000093_00002057 PEX11G coding CI01099603 null 93 ~ 2057 (-)