RNA id: TCONS_00008749


Basic Information

Item Value
RNA id TCONS_00008749
length 939
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id XLOC_003882
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6086300 ~ 6096366 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCCTGTAGTTCTCTTAGGATGGAGTGGTTTCGAGGACCAGGAATTCCCCCTCCACCTTCAATTTTTGCTAGATTTTCAGCAGTTCTCTGCAAACAAGACCAGCTTAGTCTCTTTTAAATTGTTTCACAAACAATGTATATCTGTGAATATAATCCTGAACACTGTATTAGCATTCGCTTCATAGATCAGAGGAGGCTGTTGGGAGTGAATGTAAATGTCACATTCTTTTGACTTTCCCTGCAAAAATGTCCCTGGTCAATCAATGCAGGGGTGTTCATCAACATTGGAAGTCCGAAAAGGTCAGGAAGTTTCATTACAAGCAGGAAGCATAGCATTTTGAGACCATGCAAACATTCCTAGACCCCTAAACCAGCTGTGTTCCATCCTGcacctggagggcacctttcagAAGAATTTAGCTCTACTCCTAATTAAACATGAATAAGTTGATCAGGTTTTTCAGTAACACCAGAGAGATTTGCTGAAGCTACAGGAAACCGTCAATGAGGTTCTGCTGGCTTTAATATGGTAAATCATCAGATTCTCCTATCCACCCTCTCTTTTCTGGATATTATTGGAACCTTGCACCGCTGGTTTGTATTGTCAAAGTATATTTTCAAAACAGGCTCAAacaaacttgagatgcagagtggagttgaccgcaACCAccgggtttgagtctggcgaagaacccCGAAaagcagaaagcagTCTCAGCCTGAAGGACAGAATCGATGGTGCTGGGAGGCAACGGGGAGTCTGGCCTGGAGCTGGGTAGTTTGCGGGACAGCAGAGGCGATCCGGGATATGAAGGAGAAGAAAAACAAGGACTCGAAGTTCGGCTGGAGGACAATGATGGACTGACAGGAGGAGAACAGCTCACTCCATACAGCCATTTCCTCTTCAGATCAACCACCTGCCAAAGGATTTGTTTGGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007433 lncRNA downstream 37959 6047073 ~ 6048341 (-) True XLOC_003879
TCONS_00008449 lncRNA downstream 79559 6005807 ~ 6006741 (-) True XLOC_003878
TCONS_00008448 lncRNA downstream 121929 5957009 ~ 5964371 (-) True XLOC_003876
TCONS_00007426 lncRNA downstream 220725 5857278 ~ 5865575 (-) True XLOC_003873
TCONS_00008748 lncRNA downstream 311398 5773096 ~ 5774902 (-) True XLOC_003872
TCONS_00007440 lncRNA upstream 91016 6187382 ~ 6188413 (-) True XLOC_003883
TCONS_00007445 lncRNA upstream 108204 6204570 ~ 6206556 (-) True XLOC_003884
TCONS_00007448 lncRNA upstream 165327 6261693 ~ 6262709 (-) True XLOC_003885
TCONS_00008450 lncRNA upstream 180534 6276900 ~ 6278698 (-) True XLOC_003886
TCONS_00008750 lncRNA upstream 220288 6316654 ~ 6324557 (-) True XLOC_003887
TCONS_00007437 mRNA downstream 16108 6064033 ~ 6070192 (-) True XLOC_003880
TCONS_00007435 mRNA downstream 17219 6052031 ~ 6069081 (-) False XLOC_003880
TCONS_00007434 mRNA downstream 17875 6051287 ~ 6068425 (-) False XLOC_003880
TCONS_00007436 mRNA downstream 17925 6060535 ~ 6068375 (-) False XLOC_003880
TCONS_00007432 mRNA downstream 37810 6043742 ~ 6048490 (-) False XLOC_003879
TCONS_00007439 mRNA upstream 86314 6182680 ~ 6188413 (-) False XLOC_003883
TCONS_00007442 mRNA upstream 100911 6197277 ~ 6206625 (-) False XLOC_003884
TCONS_00007443 mRNA upstream 100943 6197309 ~ 6206520 (-) False XLOC_003884
TCONS_00007444 mRNA upstream 101734 6198100 ~ 6206625 (-) False XLOC_003884
TCONS_00007446 mRNA upstream 162682 6259048 ~ 6265574 (-) False XLOC_003885
TCONS_00007438 other downstream 14234 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007400 other downstream 2132463 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 4997785 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 5106552 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 5626370 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007441 other upstream 100910 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 684342 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 847934 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 1019881 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007494 other upstream 2015003 8111369 ~ 8126195 (-) True XLOC_003913

Expression Profile

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