RNA id: TCONS_00008450


Basic Information

Item Value
RNA id TCONS_00008450
length 928
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id XLOC_003886
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6276900 ~ 6278698 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caaggaaagtgaaacttcagctagaccttgagttcagtttacaacatgaaaATCCTGatttcaacatctgatcaacacctgattttcatctgagagtaccaacatgttacaaatgagaattttccccacaaattctttgcaaaactggaccaccacctatttaatttgatgacaattttaaggcaaacagcatccaaaactggcaagacagcagataccctggctaatcttttaaaggtttatgatgagcaggaactgaatgatgtcagttcatgacggactactcttatcagaggtcttttggtcttgctgcgtgagcgtgacttaagattctttaggaacaccctggtaagacttcattcattcttttcacaattaggcatgtttaatgaaaagatgaaagttttgaaaacttttacttaataacatatttgtaatcaagaatagttgatgaatcatataatattggctcagtcattttgatactgtccttacattaatatccttgaattatgtttttagattgataatcctgctgactgaagatactttattggccctgcattcactgagggtctctgttgtcctgaagaatgaattggacaccacccacagcacacttccagacctttcttgtcttgtatggattaatcagactccagctcgtgatgatcccacatccgactactcactgtccttcacttacttcccggagcaccagagcacctcaccttaaagaagagcaccgtttacaccccattcacgttgtaaataaagcaccctccggggacttgtctgtaaacttatccaactgtgttgctgttttccctctgcctcgctgcaatatatatatatatatatctgctctccgttaaacagaaattgggggaaaaaataaatgggggcgaataattctgacttcaacgag

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140102 catalytic activity, acting on a rRNA molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007448 lncRNA downstream 14191 6261693 ~ 6262709 (-) True XLOC_003885
TCONS_00007445 lncRNA downstream 70344 6204570 ~ 6206556 (-) True XLOC_003884
TCONS_00007440 lncRNA downstream 88487 6187382 ~ 6188413 (-) True XLOC_003883
TCONS_00008749 lncRNA downstream 180534 6086300 ~ 6096366 (-) True XLOC_003882
TCONS_00007433 lncRNA downstream 228559 6047073 ~ 6048341 (-) True XLOC_003879
TCONS_00008750 lncRNA upstream 37956 6316654 ~ 6324557 (-) True XLOC_003887
TCONS_00008751 lncRNA upstream 151275 6429973 ~ 6431132 (-) False XLOC_003891
TCONS_00008752 lncRNA upstream 151275 6429973 ~ 6431348 (-) True XLOC_003891
TCONS_00008753 lncRNA upstream 176336 6455034 ~ 6456300 (-) True XLOC_003893
TCONS_00008754 lncRNA upstream 513848 6792546 ~ 6799938 (-) True XLOC_003895
TCONS_00007447 mRNA downstream 11177 6261682 ~ 6265723 (-) False XLOC_003885
TCONS_00007446 mRNA downstream 11326 6259048 ~ 6265574 (-) False XLOC_003885
TCONS_00007442 mRNA downstream 70275 6197277 ~ 6206625 (-) False XLOC_003884
TCONS_00007444 mRNA downstream 70275 6198100 ~ 6206625 (-) False XLOC_003884
TCONS_00007443 mRNA downstream 70380 6197309 ~ 6206520 (-) False XLOC_003884
TCONS_00007449 mRNA upstream 70745 6349443 ~ 6386572 (-) False XLOC_003888
TCONS_00007450 mRNA upstream 71332 6350030 ~ 6354568 (-) True XLOC_003888
TCONS_00007451 mRNA upstream 132471 6411169 ~ 6429705 (-) True XLOC_003889
TCONS_00007452 mRNA upstream 138752 6417450 ~ 6420917 (-) True XLOC_003890
TCONS_00007453 mRNA upstream 167537 6446235 ~ 6452492 (-) False XLOC_003892
TCONS_00007441 other downstream 70311 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007438 other downstream 204834 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007400 other downstream 2323063 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 5188385 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 5297152 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007456 other upstream 502010 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 665602 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 837549 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007494 other upstream 1832671 8111369 ~ 8126195 (-) True XLOC_003913
TCONS_00007548 other upstream 5046824 11325522 ~ 11331050 (-) False XLOC_003936

Expression Profile

//