RNA id: TCONS_00007452


Basic Information

Item Value
RNA id TCONS_00007452
length 546
RNA type mRNA
GC content 0.58
exon number 2
gene id XLOC_003890
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6417450 ~ 6420917 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCGTCCCCGTCTCCGGTGCAGATCCGAGAGGCGAACGCGCATCTGGCCGCGCTGCACCGCCGGGTGTCGGAGCTGGAGCAGCGGCTGCGAGAGGCGGAGAGGACCGTGCGGGAGCAGGCGGAGAGTCTCATCCGCAAAGACGAGCAGCTCAGAGCCGCCACGCAGGAGATCACGGAGGCCAAGGACAAaGAGATCTTCTTCCTCCACGAGAAGCTCTGCCAATCAGAGGAATCCATTCATAAACTCAACCAAACCATTAAAGAGAAAGACTCTCTGATTGGACAGTTACAACACAGATGTCAACTACTGGACAacatttgcaaaagccgtccgcTGCTAGACAGCATGCTGGCCCAGATGGCTGAGGCAGAGAGAATGGGGCCGGTCAGTGACTTGGGGAAGCCCACCACCAACAGCTCGCTCACGGACGGAGAGTCCAACTGCAGCCCCAGCCGCCTCTCCAACCACAAAGACTTCTCACTCAGCGAGGACGACTCTGACGATCAGGAATTAGATGGGGTTGTGTTCGGGACCACTGTATGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-100427-5 Orthologous to human VMAC (vimentin type intermediate filament associated coiled-coil protein).

Ensembl:

ensembl_id ENSDART00000193717

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008750 lncRNA downstream 92893 6316654 ~ 6324557 (-) True XLOC_003887
TCONS_00008450 lncRNA downstream 138752 6276900 ~ 6278698 (-) True XLOC_003886
TCONS_00007448 lncRNA downstream 154741 6261693 ~ 6262709 (-) True XLOC_003885
TCONS_00007445 lncRNA downstream 210894 6204570 ~ 6206556 (-) True XLOC_003884
TCONS_00007440 lncRNA downstream 229037 6187382 ~ 6188413 (-) True XLOC_003883
TCONS_00008751 lncRNA upstream 9056 6429973 ~ 6431132 (-) False XLOC_003891
TCONS_00008752 lncRNA upstream 9056 6429973 ~ 6431348 (-) True XLOC_003891
TCONS_00008753 lncRNA upstream 34117 6455034 ~ 6456300 (-) True XLOC_003893
TCONS_00008754 lncRNA upstream 371629 6792546 ~ 6799938 (-) True XLOC_003895
TCONS_00007460 lncRNA upstream 448399 6869316 ~ 6870035 (-) False XLOC_003897
TCONS_00007449 mRNA downstream 30878 6349443 ~ 6386572 (-) False XLOC_003888
TCONS_00007450 mRNA downstream 62882 6350030 ~ 6354568 (-) True XLOC_003888
TCONS_00007447 mRNA downstream 151727 6261682 ~ 6265723 (-) False XLOC_003885
TCONS_00007446 mRNA downstream 151876 6259048 ~ 6265574 (-) False XLOC_003885
TCONS_00007444 mRNA downstream 210825 6198100 ~ 6206625 (-) False XLOC_003884
TCONS_00007453 mRNA upstream 25318 6446235 ~ 6452492 (-) False XLOC_003892
TCONS_00007454 mRNA upstream 26008 6446925 ~ 6452469 (-) False XLOC_003892
TCONS_00007455 mRNA upstream 26504 6447421 ~ 6452444 (-) True XLOC_003892
TCONS_00007457 mRNA upstream 438959 6859876 ~ 6868287 (-) False XLOC_003896
TCONS_00007458 mRNA upstream 438959 6859876 ~ 6868474 (-) True XLOC_003896
TCONS_00007441 other downstream 210861 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007438 other downstream 345384 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007400 other downstream 2463613 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 5328935 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 5437702 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007456 other upstream 359791 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 523383 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 695330 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007494 other upstream 1690452 8111369 ~ 8126195 (-) True XLOC_003913
TCONS_00007548 other upstream 4904605 11325522 ~ 11331050 (-) False XLOC_003936

Expression Profile

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