RNA id: TCONS_00008754


Basic Information

Item Value
RNA id TCONS_00008754
length 3610
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id XLOC_003895
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6792546 ~ 6799938 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTAGTTAAAGTCCTTTATGCAGGACGGAAACATGTCTGGCTAAAGGCTCATTCACATAAAGACTGATAACTATAAAGACACGTGATAATAATAACTTTATCAGGGTCAATGCAAATGTAAGATAGCATTCTGTTTATTACAAAAATGTCCACATTTCTGTCGCATTAAAGATCTTATATGTTAAATGGATTCAGATTTGtcgtcaaagtaaaaaaaaaaaaaagtttttaatcatTACTAAATGAAATTATCAGGATGatatattttcaattaaaaaaacaaaatatttggcTTATAGTTATCAATGTTTACTGTGAATAGGTAAGAGCAAGGGTTGGTGCTGATCTAGTatctagttcacccaaaaatgaaaattatcacCCTCAAGGCATCATTGGTGTATTTTACTTTATTCTGTCAGACGAACACAGTCagagtagttttacatttttataatggctcttccatgctgtataaaggtgttgacctttttttaaaatcatctaAAAGTGTATAAatccacatttattttaaaatctgaacaaaaaagaaaattttttttacagtctgcAGATTTCTCTATGTGTTTTGATCATTAGCCACATGAAAACACAGTATTAGGTGACTGAAACCAAAATTTGCTGAAAATTCCAACCATGGAAGATTTTCCAGTTATAGTGTGGTCGTGTGACCTCGAGAGCTGAAGTTTTTGCCTCAGGACATCAGCATGCCATTAAAAGGTACTCCTTTTTGATTAAACAATATAGATGTGTTTACACCACAAACGAAGAAGTAATTGAGGCAAATTTCGCACACTCGCAGCAAATGTGACGCGCATTCCACATTGTTCACATCGCGGGACGGTAATCTGCCACTGTTCCTATGTTTGCATTAACTTCTGAGCAATGAACTTGCACGATTtataatttaaggcagaaatgttTTTGATACACATGGATCCACTTCATTACACAGGCATTAACCTCCCTGTCAGTGTGTAAACCATGCACTGTTATGTGATTTATGTGCTTTTGGAAGCTTCGAATAAAGAGCCACAACCCTACACCATTACACTCTGTAAAGCTGGGGTGTCCAAGTCCGTTCCTGCAGGACCACAGCACTTTGAAGTTTAGCTTTAACCCAAATGAAACACAATGGACACACTAGAGTTTAAACATGCAAAATACTGTTATATgtcgctgcgaaaaggggcgggattacacaagatgattagacattttaaaatacaagcgATTGGTCCAAATTTTAAAtctctgtacagagaggtcatgttttgatcttcgattggtctcaagcagtcacgtgacgcgatttcgcaggtcagagctCATCaaacttgaactttgcaatgcagcgaacttCGAAACTTGTTGCACGAGCTAACGTTTCCTGTCTGACGCATAAGGCAGGGAAAACTCAatgtataaaaatacacatatacatcTGAAAATAGCTTAAAGTGCACAGAGCAGGTGCATTTAGGGTGTGCCAgaatacacttttttattttaaggacaGGAGAAACAGTAGGTGTACCAGGCGCATAGCCtaaaaaaagttgaactattgtcttaatgagttatgagttaatacatttgtttaaattatgaACCCAAATCACTGATTTCCAGCAGCTGCCTGTAATGCATGTTCTCGACAATTCATTGGCTCACCTCTGACTAAACATATGAGGCATGCCTTCACATTAGAATGAACGGAAGTTTGTGGGGTGAGAAGTTCAGTATGACTGTGGCTTAAGTGTGTCAAAGCGGGGTTGGAACAAAAGTCttcagggctgcggccctccaggaactgagtttgatacCTTTGCTCCAAAGAATTCTGCGTGACGTATaccagtgttgggtcaaatatggtcaaaaccaacttttgggttaaaaaacgtcattttaaattaattgaaataaataacgCATcattggatttgtccatatttgaccataTTTACACAACAACGTTTTTTAGAGTGCACAGCATAGAGGAGACAATTTAAAACTACTGAATTTGTTTGTTTGGAAGAAGAATGTCTTGTGTACACCAAGGATGACTTGAGGTTGAGTCAGTTTTGGGGTGATTTAGATTTTTGTGTGAACAATTTCTttaaaagccacacacacacacacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaaccaatGTCAGATCCACTTCACCTTCAGTCAGAGGCAATCTCCAAATCTCTAACATGGGAACATCCGAATAAATCAGCATAAAACACTGACTCACTCATGAATGTCAATTTATGCGAGTTTAGATTCGAAAAAGGATTTGTCATCATTTGAGTTCATTCATTAAGCAGATAAAACATCAACCCTGTTTCTATTTCTATATTCTTTTATGTCTATATAGTGCTATCTTTCCAAGAGGTATAAAGGTATTTCAGTACAAACACGTGTAAAGATATTCTCCATACGGTGATCTAACAAGCACAAGTTTTTGgcttttaaactattatgtttttcttttacccagtagttaatgaaaaaaaagtgaCTGCACTTGAGTCTTGctacattaaaatgaaatcagTATTATCCTGAGATTGTTATCAATCACACTCTTACTGTTAACCCGTTAAGGCAAGACACCATAAGCTAAAGTATTTTTACTGCTTAATTTTGGAATattttgttaacatgtttttttccAGACTAGtgtaaaatacacaaaatacacactTAAATGCACATTATATTTGTGTTTGTAGATTTGAATTTCAAGAACCTCAATCCCACTTCAGTAGAAGGCCACTTGCGAACATTGAATTTCCATTCCTAAATTGAATTTTATTCCTATTGACTTTCAGAATCTTTGAACGAAAGGTTTGTTTCTATAACATTTGCCTGATAAACATATACAGCTTGTCACAAAAAAATGGTGTGCAAGCAATTTTGGTGGGACCTTAATTTCGACAACAGTTTGTTTTCCATTTGCTTTTTGCCAAGATTTATTTTAGGAATGCACCGAAATGAAAATTCTGAGCCGAACCTGACAATTCTGGATGCACTTGATCCAAAACcaaataattatttaatcttAACTCATTAACTCacttcattgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattcattcattcattcatttattcatttttattcactTTTCTAGGGCCGGgttgtgggggcagcagtctcaggagagaaccccagacttccctctccagACACTCCCCAGACACTCTGGAGCTCCTCCAGGgaatcccgaggcgttcccaggccagctgagagacatacaGTAGTCCCTCCAGTCTTGGGTCTTTCCCTAGGCCTCCTACCGGTGCGAcaagcctggaacacctcccaagAGTAAGCTCGAACTGGAACTTTTCTCCAGCTGAGCCTGTGACCCCTGTGGGCCGTGAGTCCTGCTCTTCAGGGGTTGGCGAGGGGCTGCGTGGGATCATACTCTGATACCATTCTCGATTGTCCTCTAATGTATCTAGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008753 lncRNA downstream 336246 6455034 ~ 6456300 (-) True XLOC_003893
TCONS_00008752 lncRNA downstream 361198 6429973 ~ 6431348 (-) True XLOC_003891
TCONS_00008751 lncRNA downstream 361414 6429973 ~ 6431132 (-) False XLOC_003891
TCONS_00008750 lncRNA downstream 467989 6316654 ~ 6324557 (-) True XLOC_003887
TCONS_00008450 lncRNA downstream 513848 6276900 ~ 6278698 (-) True XLOC_003886
TCONS_00007460 lncRNA upstream 69378 6869316 ~ 6870035 (-) False XLOC_003897
TCONS_00008451 lncRNA upstream 545862 7345800 ~ 7349497 (-) False XLOC_003908
TCONS_00008755 lncRNA upstream 545988 7345926 ~ 7349386 (-) False XLOC_003908
TCONS_00008756 lncRNA upstream 545988 7345926 ~ 7349427 (-) True XLOC_003908
TCONS_00007486 lncRNA upstream 562486 7362424 ~ 7365383 (-) True XLOC_003910
TCONS_00007453 mRNA downstream 340054 6446235 ~ 6452492 (-) False XLOC_003892
TCONS_00007454 mRNA downstream 340077 6446925 ~ 6452469 (-) False XLOC_003892
TCONS_00007455 mRNA downstream 340102 6447421 ~ 6452444 (-) True XLOC_003892
TCONS_00007451 mRNA downstream 362841 6411169 ~ 6429705 (-) True XLOC_003889
TCONS_00007452 mRNA downstream 371629 6417450 ~ 6420917 (-) True XLOC_003890
TCONS_00007457 mRNA upstream 59938 6859876 ~ 6868287 (-) False XLOC_003896
TCONS_00007458 mRNA upstream 59938 6859876 ~ 6868474 (-) True XLOC_003896
TCONS_00007459 mRNA upstream 69374 6869312 ~ 6880725 (-) False XLOC_003897
TCONS_00007461 mRNA upstream 69749 6869687 ~ 6877973 (-) True XLOC_003897
TCONS_00007462 mRNA upstream 141451 6941389 ~ 6970107 (-) False XLOC_003898
TCONS_00007456 other downstream 10470 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007441 other downstream 585957 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007438 other downstream 720480 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007400 other downstream 2838709 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 5704031 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007463 other upstream 144362 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 316309 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007494 other upstream 1311431 8111369 ~ 8126195 (-) True XLOC_003913
TCONS_00007548 other upstream 4525584 11325522 ~ 11331050 (-) False XLOC_003936
TCONS_00007549 other upstream 4530787 11330725 ~ 11331090 (-) True XLOC_003936

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU279806 True 2683 lncRNA 0.33 2 CI01000057 4382698 ~ 4433790 (-)