RNA id: TCONS_00007462


Basic Information

Item Value
RNA id TCONS_00007462
length 6049
RNA type mRNA
GC content 0.41
exon number 19
gene id XLOC_003898
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6941389 ~ 6974022 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTTGGAACGGAATGAAAGGTGTGATGTGTGAAGATCCAgactgcagctgacgtcagaggCGTGTGGTATAAAAGCAgagcagacacagacacagacacacactcagaaCCTCAGATCTGTTGCCCTGCTCAGACGCAGACCCTGAACATGCTGTGGAGTCTCTGCTTCAGCTGTTTCTTCTATCTGCACAGCGCTCTGGTTTCTGCTCAAGGAATATCTAGAGATGGAGAGATTATCAAACAGATTAAAGGCACAAACCAGGAGCTTGCTGAAATCAAAGAACTACTCAAGCAACAGATACAGGAAATAGTTTTCCTGAAGAACACGGTTATGGAGTGTGAAGCCTGTGGCATGAGACCAGCAGATCTGCAGCCTTCATGTGATCCCAACCCCTGCCACTCTGGTGTGGAATGCATTGTTACACCCAACGGCATCAAGTGTGGCGCATGCCCAGCAGGCATGACGGGAGATGGAACTCACTGTGAGGACGTTGACGAGTGTACTGTAATCCCATGTCACATGGGGGTGAGATGCATTAACACATCACCTGGGTTTCGCTGTGGCCCCTGTCCTGCTGGGTACACGGGTCAACAGGTGCAGGGGGTTGGAATCCCCTATGCATCGGCTAATAAACAGGTCTGCACAGACATTAACGAGTGCGCGAATTCAAATGGAGGCTGCGTGGAGAACTCTAACTGCATCAACACACCGGGTTCTTTTCGCTGTGGCCGCTGTAATGCTGGTTTTGTTGGGGATCAGGTCAAAGGGTGCAAAGCCGAGCGGACATGTGGTAACGGTCAGCCCAATCCATGCCATGCCAGTGCAGAATGCATTGTTCACCGTGATGGACAGATTGAGTGTGCATGTGGCGTTGGATGGGCTGGGAATGGATACTTATGTGGAACTGACACCGATATCGATGGCTTCCCTGATGAAAAGTTGGAATGTGTGGAAAGAAACTGTgcaaaggACAACTGCCTCACTGTTCCAAACTCTGGCCAAGAGGATGCCGACAAGGATAACATTGGTGATGCATGCGATGATGATGCTGATGGCGATGGGATTCTCAACATAGAGGACAACTGTGTGCTCGTCCCTAACGTCAATCAGAAGAACACTGATCAGGATGATTATGGAGATGCTTGTGATAACTGCCGTCTGGTGAAAAACAACGACCAGAAGGACACAGATGCTGACGGTCAGGGTGACGAATGCGATGACGACATTGATGGGGACGGAATCAAAAACGATAATGACAACTGCAAAAAGGTGCCAAACCGTGACCAGAAGGATCGAGATGGAGATAATGTCGGCGACGCCTGTGACAGCTGTCCCTACATCCGCAATCCTGATCAGACGGATGTGGATAATGACTTGATTGGTGATCCTTGTGACACCAACAAAGACAGTGATGGAGATGGCCATCAGGACTCTCGAGACAACTGTCCTGCAGTTATCAATAGTTCCCAGCTGGACACGGACAAGGATGGCATCGGAGATGAAtgtgatgacgatgatgacaatgATGGCATTCCCGATCTTCTTCCACCCGGTCCAGACAACTGCCGATTGGTTCCAAACCCGCTACAGGAAGACATTGATGGTGATGGGATTGGAAACGTTTGTGAGAATGACTTTGACAACGACACATTTAGTGACATCATTGACGTTTGTCCTGAGAACGCGGAGGTCACTCTCACTGACTTCAGAACCTATCAGACCGTGGTTTTAGACCCAGAGGGTGATGCACAGATTGATCCAAACTGGGTGGTCCTCAATCAGGGAAGAGAGATTGTTCAGACCATGAACAGTGACCCTGGACTAGCTGTGGGCTATACCGCGTTTAATGGAGTGGACTTCGAGGGAACGTTTCATGTGAACACTGAGACAGATGATGACTATGCAGGGTTTATTTTTGGCTATCAAGACAGCTCAAGCTTCTACGTGGTGATGTGGAAGCAAGTGGAGCAGATTTACTGGCAGGCTAATCCTTTCAGAGCTGTAGCTGAGCCTGGTATCCAGCTGAAGGCAGTGAAATCAGACACAGGACCTGGAGAAAACCTGCGGAACTCACTCTGGCACACAGGTGACTCCACCAACCAGGTGAAACTGTTGTGGAAAGATTCCAGAAATGTTGGCTGGAAAGACAAGACCTCCTACCGCTGGTTCCTGCAGCACAGACCGCAAGAAGGCTACATTAGGGTTCGCTTTTATGAAGGTCAGCAGATGGTGGCAGACACAGGAGTTATTATCGACGCAACCATGAGAGGAGGAAGGCTGGGAGTTTTCTGCTTTTCTCAGGAGAACATAATCTGGGCCAACCTGCGCTACAGATGCAACGATACAATCCCTGAGGATTTTGAGACATTCAGAACCCAGCAAATCCAGCTTTTTTAAAGCCAAACTCATCACCATCaaatttcaagatttttttttttttttacaatcttaatGAATGTTTGTTTGGTGAATTTCGTCATGTGTGACATATTTTatacttcattttttaaatgtattgaacAATACCAGGTTTCCTCAAAAAAACCCAAATGGCAGACAGATGCTGCATTAACACTGAGATCACAGACATCAGGatttaaatatatagatatatgtattttaaaaacacgTACAGAAATACAggtaacaaaatataaatgatataacAAGAAGGCTCTGATATATGCAGCGGAGACATCATGCACATCCATATTTAGTATACTTCTTTTTTCTGAAAATGGAAAAGGACCAGCAAAACGACAAAAAGACGAAATCAGTTCCTTCTACAATCACTTACCACAAATAAGAGACAAAGATGACCACACCAGCACAGCAACTACAGAAGTGGCCCAAAGAAAGCTCTAGACGACCACAAATTATATGTCCTAATATACCGTTAATTCCAATAAAGAGCGAGAGCTGTGCTCGCGTAATGAAAGATCACAAAGATTTGATGCACATTCTGTAATCTAACACTCTCATGAGAGGTTTACCTTTAATACTCATTAAACCTGCTTTAAGTGAAATGTCAGTcgacaaaattaaaaatatatatatatcgtctTTACAGAAATCATAGATGGCACTTAGTTAATGCTAATGCTATGAGTTAAAGAAACAccacttttatttttgcaaacaGGCTgcttttacaactcccctagaatTAAAGAGTTCAGTTTGAGCATTTTTGAATACATTTAGCCAGTCTCTGAGCCTGGCGGGAacacctttagcttagcttagcatagatcattgaatcagattggaccattagcatctcgctcaaatttaaaaaaaagaaatatgctTGAATACTGTTAcacaagctatgtttccatctaaaaatgcTAAAAAGAAATTTGCGGAAAACTGGAATATCGAAtgaaagacgtgcaaataaagcagcgtttccatccaacaaatcaaagcaaacaaaatcgtcacttcttgATAAACTGgtaccaaatatcaacagtacaaactgaatttactgcagtaggagaagctgtgtgaatcttttcttcatttaatgaCTTGCCTCAGAAGGCAATAACACGAAATGAATGCGTGGTGGCGTTCAAAGGTGCGTTtgaagtgtttccatcgtagtttaagcaaatcttttcttattgaattaaagtttatcctactcagttatgttcAAAtgatttttattcacattttcaaaatgtatgcgcatctttgcatttccatcaaccgtttattaatgtgcatattcaAAATCCGCATAAAAATGTGGATGGAAACGTTGCTATTGTGTGCTATTTTATTGgtcgatatggctaggaactataatCTCATTTTTGAgccagatgctaatggtctaatctaattcaattgATTATGCTAAGCAAAGCTAATAGTGATCTTGCCAGACCTGCTGTTCGGCAAATATTGCAGTAATTTAGAGTAAACTAACCACTCAATCAGTCATTTTTGGCCatcaaaaaattttaaatttgataaaaggcaggtaaaatttttaaataaaatataattattataaaaaatctttgatattccatgacttggacaaaaaaatttaattccctgattttaaatgtaaaaaaatgcttcAAATATTACAGTAAATTTTAAGAAAAATCAGGTATTTTCCATCGTAGTTTAAGCGCATCttttcgaataaaaagtttattttactcagttatgcgcatacgtttttcatgtgcattttctacatttttatgcatcttggcatttttatccaccattttttttaatgcgcttatttaaaatctgcataaaaatgggtggatggaaaCTTAGCTATTGTGTGCTATTTTCTAGGtggatatggctaggaactatactctcattctggcatacgaaacaaggaactttgctgccatatCATGGCTTCAGCAGGCGCATATTACAAGTTCCTTGTTCTTATTATGATGGAACTACAGTATAGTTCATAGCCATATTAGCCAAGAAAATaggaacttttcattttctgtcacaCTTAAACCACGGTCACGTTGTACTTTTCAATCCATAGACTTTCATTTATACGCAggcaaatgcgtcagactggaaacgaaAGCTtttgcgacaagtttcgcagtttgctttattgcaaagttcaagcttgatgaactctgacctgcgacaacgcatcacttgactgcatgaaaccaatcaaaattcaaaatatgacctctctgtacagaaattaaaaatttggagcaatcgctcgcttttaaaaCGTCTAAACATCTTGTTTAAGTCCCGCCCCTTTCCGTAGCACTGTGCGACAGAACTtggcatgctcaaactctagtgtgatttaAGTAGATTAGTACTCGATGTAACTTAAGAAGGGTCAAGCTATACATAGTTagattatcaaaactctttttgaaatttttgagcgagatgctaacggtctaatctgattcaattgaatatgctaagctaagctaatagtgctcTTGTCAGACCCACAGAttggctaaatggattcaaaCATAATAAAACTTCAGTGAAgttgtaaaatttgcattttcaaaaaaaaaaaaaacagtttcattAAAAGGAAGGAGTGTTATATCGATCAACGCTAGCTATCCTATGGGTCACTACTactattatgttttgttttttgtttttttattaagaaatacaTCCCGTTTAGTCAACTACGTCCTTATTAGTCTTAATGGTACGGACATGGTAACTAACTGCTCAGCAGTTCTATTAAGGCTTAAAGGGGAATTTACGCTAAAGGGGGTTTGCTCACACAAATAACCAGAACAGTTAACAATTCCAACATACACAGAAGTGCTGTTAGCTAAAACCGCTTCAGAAACGCCCCGAACAGGCAGTTTGGCTGCATGCTAAATCAACAACAGATTATTTGACCAATAAACACGTGCAGTCTGCCCACATCTCCAAATGTTTCGCACGTTAAAGCAACAAACAGACTGAGCCCTTTTTTTTCGGTTTGCATTGGGAAGTCACACATATACGCTTCCAGAATTGTTTTCCCTCTGAATTATCAGTGCAGTACAGAGAACAGTACACAAAAAACGCACCATCACGATAAACCGGGGAAGAAAAACGCATGTACAGTTGAAAAAATACGCATCCTCGTAAGGTAAAACAGTCCAAGTTTCTGAAGCCAAAGATTCTGAAGAAATGCACATACATCAGTATGAAAGCTGCCATATCTTTCTGAcaggatttgaaatgaaaaccCAAGATGCAGTGAGCATGAGGAGGGGGAATGACCCAAACGAACATATTAAACATGCTACAATCGTgaggaaataaatcagaaatGCTACTGTGACCAGAAAGAAAGAGCAACATAACAGATCGGTGCTTTGGTCAAGCATTCTCAAGCAGATCATTTGGTGTAATGCACTAATACGGAGCCCCATAAATATATTCCGTTTCTAAACATGATCACAGACAGTAAAATGACACCACTAGCATTAACTAATACATGCACTGTGTCTGGGGGTCTATACTGTTTTATGTGCAGtgaatctttttttt

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko02020 Two-component system
ko02024 Quorum sensing
ko01001 Protein kinases
ko02022 Two-component system

ZFIN:

id description
ZDB-GENE-060606-1 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Is expressed in several structures, including head mesenchyme; heart primordium; mesoderm; pectoral fin; and somite. Human ortholog(s) of this gene implicated in carpal tunnel syndrome; multiple epiphyseal dysplasia 1; osteochondrodysplasia; and pseudoachondroplasia. Orthologous to human COMP (cartilage oligomeric matrix protein).

Ensembl:

ensembl_id ENSDART00000171255

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007460 lncRNA downstream 71354 6869316 ~ 6870035 (-) False XLOC_003897
TCONS_00008754 lncRNA downstream 141451 6792546 ~ 6799938 (-) True XLOC_003895
TCONS_00008753 lncRNA downstream 485089 6455034 ~ 6456300 (-) True XLOC_003893
TCONS_00008752 lncRNA downstream 510041 6429973 ~ 6431348 (-) True XLOC_003891
TCONS_00008751 lncRNA downstream 510257 6429973 ~ 6431132 (-) False XLOC_003891
TCONS_00008451 lncRNA upstream 375693 7345800 ~ 7349497 (-) False XLOC_003908
TCONS_00008755 lncRNA upstream 375819 7345926 ~ 7349386 (-) False XLOC_003908
TCONS_00008756 lncRNA upstream 375819 7345926 ~ 7349427 (-) True XLOC_003908
TCONS_00007486 lncRNA upstream 392317 7362424 ~ 7365383 (-) True XLOC_003910
TCONS_00008757 lncRNA upstream 803725 7773832 ~ 7775701 (-) False XLOC_003912
TCONS_00007459 mRNA downstream 60664 6869312 ~ 6880725 (-) False XLOC_003897
TCONS_00007461 mRNA downstream 63416 6869687 ~ 6877973 (-) True XLOC_003897
TCONS_00007458 mRNA downstream 72915 6859876 ~ 6868474 (-) True XLOC_003896
TCONS_00007457 mRNA downstream 73102 6859876 ~ 6868287 (-) False XLOC_003896
TCONS_00007453 mRNA downstream 488897 6446235 ~ 6452492 (-) False XLOC_003892
TCONS_00007465 mRNA upstream 7161 6977268 ~ 6985463 (-) True XLOC_003899
TCONS_00007466 mRNA upstream 16482 6986589 ~ 6989598 (-) False XLOC_003900
TCONS_00007467 mRNA upstream 16806 6986913 ~ 6989598 (-) False XLOC_003900
TCONS_00007468 mRNA upstream 17246 6987353 ~ 6989598 (-) True XLOC_003900
TCONS_00007469 mRNA upstream 31841 7001948 ~ 7029897 (-) False XLOC_003901
TCONS_00007456 other downstream 159313 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007441 other downstream 734800 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007438 other downstream 869323 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007400 other downstream 2987552 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 5852874 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007477 other upstream 146140 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007494 other upstream 1141262 8111369 ~ 8126195 (-) True XLOC_003913
TCONS_00007548 other upstream 4355415 11325522 ~ 11331050 (-) False XLOC_003936
TCONS_00007549 other upstream 4360618 11330725 ~ 11331090 (-) True XLOC_003936
TCONS_00007551 other upstream 4368697 11338804 ~ 11339100 (-) True XLOC_003938

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_04512368_04525620.mRNA True 2541 mRNA 0.45 17 CI01000057 4511877 ~ 4525620 (-)