Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00007461 |
| length | 799 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 9 |
| gene id | XLOC_003897 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 6869312 ~ 6880725 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006364 | rRNA processing | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004386 | helicase activity | molecular_function |
| id | description |
|---|---|
| ko03009 | Ribosome biogenesis |
| id | description |
|---|---|
| ZDB-GENE-031030-3 | Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be involved in rRNA processing. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human DDX49 (DEAD-box helicase 49). |
| ensembl_id | ENSDART00000160271 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008754 | lncRNA | downstream | 69749 | 6792546 ~ 6799938 (-) | True | XLOC_003895 |
| TCONS_00008753 | lncRNA | downstream | 413387 | 6455034 ~ 6456300 (-) | True | XLOC_003893 |
| TCONS_00008752 | lncRNA | downstream | 438339 | 6429973 ~ 6431348 (-) | True | XLOC_003891 |
| TCONS_00008751 | lncRNA | downstream | 438555 | 6429973 ~ 6431132 (-) | False | XLOC_003891 |
| TCONS_00008750 | lncRNA | downstream | 545130 | 6316654 ~ 6324557 (-) | True | XLOC_003887 |
| TCONS_00008451 | lncRNA | upstream | 467827 | 7345800 ~ 7349497 (-) | False | XLOC_003908 |
| TCONS_00008755 | lncRNA | upstream | 467953 | 7345926 ~ 7349386 (-) | False | XLOC_003908 |
| TCONS_00008756 | lncRNA | upstream | 467953 | 7345926 ~ 7349427 (-) | True | XLOC_003908 |
| TCONS_00007486 | lncRNA | upstream | 484451 | 7362424 ~ 7365383 (-) | True | XLOC_003910 |
| TCONS_00008757 | lncRNA | upstream | 895859 | 7773832 ~ 7775701 (-) | False | XLOC_003912 |
| TCONS_00007458 | mRNA | downstream | 1213 | 6859876 ~ 6868474 (-) | True | XLOC_003896 |
| TCONS_00007457 | mRNA | downstream | 1400 | 6859876 ~ 6868287 (-) | False | XLOC_003896 |
| TCONS_00007453 | mRNA | downstream | 417195 | 6446235 ~ 6452492 (-) | False | XLOC_003892 |
| TCONS_00007462 | mRNA | upstream | 63416 | 6941389 ~ 6970107 (-) | False | XLOC_003898 |
| TCONS_00007464 | mRNA | upstream | 66993 | 6944966 ~ 6974022 (-) | True | XLOC_003898 |
| TCONS_00007465 | mRNA | upstream | 99295 | 6977268 ~ 6985463 (-) | True | XLOC_003899 |
| TCONS_00007466 | mRNA | upstream | 108616 | 6986589 ~ 6989598 (-) | False | XLOC_003900 |
| TCONS_00007467 | mRNA | upstream | 108940 | 6986913 ~ 6989598 (-) | False | XLOC_003900 |
| TCONS_00007456 | other | downstream | 87611 | 6780708 ~ 6782076 (-) | True | XLOC_003894 |
| TCONS_00007441 | other | downstream | 663098 | 6197276 ~ 6206589 (-) | False | XLOC_003884 |
| TCONS_00007438 | other | downstream | 797621 | 6071960 ~ 6072066 (-) | True | XLOC_003881 |
| TCONS_00007400 | other | downstream | 2915850 | 3953723 ~ 3953837 (-) | True | XLOC_003853 |
| TCONS_00007330 | other | downstream | 5781172 | 1069406 ~ 1088515 (-) | False | XLOC_003806 |
| TCONS_00007463 | other | upstream | 66327 | 6944300 ~ 6948018 (-) | False | XLOC_003898 |
| TCONS_00007477 | other | upstream | 238274 | 7116247 ~ 7116363 (-) | True | XLOC_003904 |
| TCONS_00007494 | other | upstream | 1233396 | 8111369 ~ 8126195 (-) | True | XLOC_003913 |
| TCONS_00007548 | other | upstream | 4447549 | 11325522 ~ 11331050 (-) | False | XLOC_003936 |
| TCONS_00007549 | other | upstream | 4452752 | 11330725 ~ 11331090 (-) | True | XLOC_003936 |
