XLOC_003899 (si:ch211-253b8.2)


Basic Information

Item Value
gene id XLOC_003899
gene name si:ch211-253b8.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6977268 ~ 6985463 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007465
GAAATCGTTTCCCTCTCCAGTACATGAGATGGCGGTATGCAGCTAAAAATTTGGCGCAACCCGCTAATAAACACAAGGAAGAAGAAAAGGTGAGGAAGAAGAAAGGACGCTGTGAGGATACGGAAGAAAAACGAGTTTGTTACAAAAGCAACCAAAATGGGACTTGTGTCTATTCATTCGTTCCTATTGAAGCGCATGACTGCAGTAGCCGAAGAGATATTCGACGTTGTCAAAGGCAGCATAACTGAATACGAGCAGGAGATCGAGCGTCTGAAGCAGGAGAACTGCTGTCTCAGGAACACGCTGAGTCAAAGCAGAGTCTGCAGCCGAGCAGAAGCACACCATGATACTCCAATGCCCGAAGGTGAAGTCACGCAAGCTCCCTTGGCTTCAGACATCTCAGAAATACGAGTAAAGATGGAGGTTGCTGCTGTACCAATGAGCAATGCTTCGACCAGCACTTCTCCCATTTCTGAAGAGTATAAATGGTGTGAACCCCATCACTACCAGTCAAATCTGCCAAACGTGCTGTTGAGGAATGAAGAGAATCTTGGGATAGATACTCAATCATCAGTCACAGTTAAGTCAGAGCAGTCTGATAATCAAGATAATCATTCATACTCTGCTGCAGTGGAGGTTTGCATCGATTCCCAAACTGAATATCCAGCACCTCAACAAGATCCAACGCCTTTTCCACTTTACACTGAGACTTCTAATGAGACGAGACCAAAGGCTGGTGGTCAGCGTCAACAGAATATATTATTTTGCAGGTTTTGCAGAAGGCTCTTCCGCACCAGAGGACGCTTGCAGAAACACCTGTTAGTGCACAAGAATGATGTATATTTATGGAACAGTGCCCCATCTGGGAGTCGATTCAAATCCAAAATCCATTTGAAGCCACAGGAGAGGCTGAACACAGAAAGACAAGCAGAGACAAATTGGACTGGACAACTGGCAGGCTCGCAGCGCTCCCATCATGTGGACACAAACCAACGCAACTCTGACAAATTAAGTTCATCCGATCAACAACATGGGAATTATCCTTTCTACTGCAAGGTATGCGACAGGCCTTTCAGACGTCAAAAGAGCATGCAAAACCACATGCTTTTGCACCAGGATGAGCGAAACTACGCTTGTCAGTTCTGCGGGAGGAAATTCCATAAGAGCTGGCATCTGGCAGAACATTTGcggattcacaccggagaaaaaCCATTTGGATGCAGTGAATGCGGAAAGAGGTTTGTTCAGTGGAATCAGGCAAGATCACACATAATCAAGCACCACGAAGGAAACATGTCTCTGTTGACAAAGGCATGATCCTGTAACCTGCTTTTTGCTATTATCTCTTGTTCATCTTGAAAATTCAGTCAGtcataatttagaattttaaaCGTTGGGTCACATTTGTGCCATGGATTTTGTAGATATATACATTCCTCATTCCCAATGTCTGTCATTTGCAAAATAATGataactttattattatgttCATGTAATATGACTAAtatttattgtttcaaagcatctttacagtaaaaatatatacactccAGTACTAATTTGGGAAATTTCATAGGTCTTTATTGTGTGGTTCTTTTGAATGTTTCATTAAACATTAGACTTCAGTATGTTTGTCTTTATTTGCCAAGCAAGCAAACCAAAGGCAACTCTTATAATATAAACAGCTTCAGAAATCTGGTTGTTTGAGAGTGGTCTCAATGGTTAATTATAAATcgtatataaattatatataaaggcTATCCGAATCATGCCCAGGCGCATCTCCTGGTTTGTTTGTTGAGTATGAGTGCTCTGAATTGTGCCTGTGCATTGTTCAGTTGGCCGGCCTTgacctggttggaagaggtgtgccagagcgcagttcGGTCGGGCTTTGACACGTAAATTAGAGCTGCataattaatcgttaaaagatcacgatctcgagtcgaccccctagacgatcttaatccagcatttctaccatTCTGCCAATcacattttcaagttcaggagagaagaaaaggcggccgcaagagtcttttcattgtttcacatacagtgacattgacacctccaaatgatgttaaaagagtcacatactgtatttataaggtataattcacttaaaatgtcatttttgtctttatatatTGATGTTTTcgtggccgggaaatcacacgtgatgtgagctgctgaccgtgagctgttatcacagagagagAGCGCGCGCTACTTAATAATAGACGTGCACGTGtctactttcaagagttcactcttagctgatgattaattataaaagcttgtttggcatgctgtcccgggagagagccctgagctcatgagatcctcgagctcagggctcccttccgttgcaaggcgggaggggagtttgagctcaggtagatctcgagaactcccctgctgtagcaagtgattgctcttgaaGATAACTATGTACTAGAAGcgtgtctatggtgccaatttggattgttcaattgacttagggtgctttcacacctgcacttttgtttcggaacgtatctcgtttgcctagttagcgcggttcgattggcatatgtgaacagggcaatcgcgctctgttccgcgccaaagtaatcgctccgagatcgcttgaatgaggtggtctcggctcgattgaaacgaaccctggagcggatcgattgcagtgagaaagcgatccgatccgagcgcggttatatcacagtgttttatagatatgtaataggcttacggctatatgaagagagaattatgagtagggcgggaagtttcgcgagtctccggatacccgcaaacgagtgatgatctcccggtaatctcgcgtccccctccggtcctcaaataggcatcgttgcgcacccttctcacccctccctccCTTCTCCCTCCACCCCTTCTCAtccgtctctcctcagacacgtcgcgcgcgctcaccctgtcaatcaccaccaaaccaccacctctcctgacagcttagcgggacgctgcaaaataaaccctgacactctgactaatgtgaggagagtttactcgcacgtgacttgttttagctcttttggtccgattagaaactttgcagtgtgaaagcgaaccgctccaagagcaaagagcaacaatgtaacaattgtaatctctgtttcggaacaactgaatcgattcacaggtgtgaaagcacccttaattgcatgtttttaggcggtgggaggagaccggggaacctgggggaaacccacgtgagcacggggagaagtgcaaacttcacacagaaatgtctgctagtttggtaaagccaggaaccagagacattcttgctgtgaggcaacagtgctacacactgggccaccatgtcacccatctaagaaggaggagtaggggaggaaggggggactcttcaaaacgaagatagcagtggaatggaACCCatggtatttatagtagtttaggagtcatctggtTGGAGCGTAGTGATTTGGATAATGcagatccagccgctagcaatcataagcacgtgatcctcttgaaatttgtttatacataaacttcacttagtgaacagaacctgcatatgttgcgagtaacaggtaataaatttgtaaataatattcagtttgtggcacagagtgatcgtttgggagccgcgcgcgcgaagtatgaaagagcacttagcagtcaaaattaaaccgatcgtgatctttattttaagcctaaaaatcgcgattctcatttaaGTCAGTGCAGCTCTAacataaattgaaactgtcagtccagttctcagtttagttcagttcagtgtggtttaattttcactgttgaaagtccaaacacttaaGAGCAATGTGCAGctcctaaaccaagcaagccagtgtcAACAGTGGCGAGTAAAAAGTGAAGGCAAAAACCTTGCGAGAGACCAGGCTCCATTGGGAAAAACATTTCTCCTCTGGACAAACATATTGCGCAGAGCTGCGGTCTATGCTTGGAGGCTGGAATTTCATTGTAAAGAAGCTGCAGGTGGTCACcggtgggtgttcaggctggcccacgagatcaatgcggagactcgtctgtcactggtgtctttcaggaatcagtctcatgatCTCCTCTCCTTCATGACCGCCGCATCATCTGCTCAAGATACGGCCTTGTACATGATTATGGCGACCTCTAGAAGTCCTCcgtggttggcatcatctcttcacaggtcttggatcacatcaatggtgctggaaattgttttaatttatttttaaaggtcagtatatacaaacattatttttacagATCGCTTGAATTTGAGTAATCATTCCGAACTtccatttaaagtaaaaaaaagaaaaagatttatcTTGGAGATGCAAAATGTACCTACAGTTCCATTATCACACATTTCTGCACAATAGCCATGTGCATTTTATAAAAGTTAGACCAGATCAGAACATGATTTGGGTCACATTTATGGACTTCAGTGATTTCATTTTCATAATTTCCAAAAAATTCTGTTCGACCTCTTTCTCTTTTGTTCcattttaattctgtttattatGTGTCTTCCCTTTAGTAAATCACTCTGCACAGTTCCCTCAGGTTTCAGTGACCAGttgtcatttatatttaaaaatgtttgtatgagTTTGCATTTTCATATTGACCTGTCTTGTTGCTTCCATTAAACCTTTTTGTTAACTA

Function

symbol description
si:ch211-253b8.2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4633 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000089230

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007465 True 4713 mRNA 0.43 3 6977268 6985463

Neighbor

gene id symbol gene type direction distance location
XLOC_003898 comp coding downstream 3246 6941389 ~ 6974022 (-)
XLOC_003897 ddx49 coding downstream 96543 6869312 ~ 6880725 (-)
XLOC_003896 lsm4 coding downstream 108794 6859876 ~ 6868474 (-)
XLOC_003895 NA coding downstream 177330 6792546 ~ 6799938 (-)
XLOC_003894 BX936438.1 coding downstream 195192 6780708 ~ 6782076 (-)
XLOC_003900 zgc:173548 coding upstream 1126 6986589 ~ 6989598 (-)
XLOC_003901 cdh27 coding upstream 16485 7001948 ~ 7030047 (-)
XLOC_003902 si:ch211-253b8.5 coding upstream 53796 7039259 ~ 7078475 (-)
XLOC_003903 bmp7a coding upstream 122335 7107798 ~ 7147540 (-)
XLOC_003904 CR925817.2 coding upstream 130784 7116247 ~ 7116363 (-)
XLOC_003938 BX324177.10 misc upstream 4353341 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 4382131 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 4384992 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 4395441 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 4398370 11383833 ~ 11384130 (-)
XLOC_003893 NA non-coding downstream 520968 6455034 ~ 6456300 (-)
XLOC_003891 NA non-coding downstream 545920 6429973 ~ 6431348 (-)
XLOC_003887 NA non-coding downstream 652711 6316654 ~ 6324557 (-)
XLOC_003908 NA non-coding upstream 360337 7345800 ~ 7349497 (-)
XLOC_003912 NA non-coding upstream 788369 7773832 ~ 7796332 (-)
XLOC_003920 CR847563.2 non-coding upstream 1491498 8476961 ~ 8515750 (-)
XLOC_003922 NA non-coding upstream 1998188 8983651 ~ 9523184 (-)

Expression


Co-expression Network