XLOC_003920 (CR847563.2)


Basic Information

Item Value
gene id XLOC_003920
gene name CR847563.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 8476961 ~ 8515750 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007513
gttttagttttcGTTTACTAATATCACCCTGTTTCCTGTAGACATCTTTTTGAAGTGAAGATGAGCTGGAATGGAGACAGTCGTTTTTGGCAGAACAGCCATGAAGCTATTCCAGGCAGTGCTGGaacataaatatgcacacagacaGCCCACAGAAAGCGTGGGTGTACTGCCAGACCTGGACGGAGGACGGgttagaacatttaaaaaaaaaatagcctgaATATGAGGTGAGACTCATGAGGCAGCTAAGTGTGGGAGTTTGTTTCCTCTACAACTTCACTCACTAACTCTTATTCATTGAGACGCAGCTAGACAAAACCGTTTTCCTCATTTGCATGTAATTAAAAGTGATATCTCacccaaatattaaaatgatgTCATTATTTGCTCACCTCATGTTAACACCTGTAAGATTTTCTAAGATCtgtgaaaatgcaaaaaaaaaatctgtataataAACGTCAATG
>TCONS_00008761
ATATAAACGTTTGCTCCTGCGATTGACCAATGGCTGACTGATTAGTCTTTTAATAAAGACACATTTGGATCCACAACTTGTTCCCCGAACCATTTTGTGACAGACTGATGTGTTTGTCTGTAAAAGTTCATCTACAGGTGTTTCTCTAAACAGTCGCAGACATCTTTTTGAAGTGAAGATGAGCTGGAATGGAGACAGTCGTTTTTGGCAGAACAGCCATGAAGCTATTCCAGGCTGCacaaaatttcaaaaaatcttctaCTCTATGGAAGAAAAAGTTATACAGCCTTGGAATAAAGGCAGTGCTGGaacataaatatgcacacagacaGCCCACAGAAAGCGTGGGTGTACTGCCAGACCTGGACGGAGGACGGgttagaacatttaaaaaaaaaatagcctgaATATGAGGTGAGACTCATGAGGCAGCTAAGTGTGGGAGTTTGTTTCCTCTACAACTTCACTCACTAACTCTTATTCATTGAGACGCAGCTAGACAAAACCGTTTTCCTCATTTGCATGTAATTAAAAGTGATATCTCacccaaatattaaaatgatgTCATTATTTGCTCACCTCATGTTAAC
>TCONS_00007514
gttttagttttcGTTTACTAATATCACCCTGTTTCCTGTAGACATCTTTTTGAAGTGAAGATGAGCTGGAATGGAGACAGTCGTTTTTGGCAGAACAGCCATGAAGCTATTCCAGCACCTGATTCACAAAACAACTACTGCGATCCAGACTTGAGCTGACTCCAAATCAACACATAACCTGTTAAAATCTGCCTCACTACATATGATATATATCCAGCTATGATGCTTCTCCACATCTTTTCATCATCGTTTGATGAATTATATCCACTAtgattgaaataaaacaaacactgctTGGATTGCGGGTGGTTTGTGAATA
>TCONS_00008762
GGGTTTTATTTGTCTAGTCTTTCTTGACTGTACGGTTCTTAATAACCTTGTATATATATAAACGTTTGCTCCTGCGATTGACCAATGGCTGACTGATTAGTCTTTTAATAAAGACACATTTGGATCCACAACTTGTTCCCCGAACCATTTTGTGACAGACTGATGTGTTTGTCTGTAAAAGTTCATCTACAGGTGTTTCTCTAAACAGTCGCAGACATCTTTTTGAAGTGAAGATGAGCTGGAATGGAGACAGTCGTTTTTGGCAGAACAGCCATGAAGCTATTCCAGCACCTGATTCACAAAACAACTACTGCGATCCAGACTTGAGCTGACTCCAAATCAACACATAACCTGTTAAAATCTGCCTCACTACATATGATATATATCCAGCTATGATGCTTCTCCACATCTTTTCATCATCGTTTGATGAATTATATCCACTAtgattgaaataaaacaaacactgctTGGATT
>TCONS_00008763
GTGGGTTTTATTTGTCTAGTCTTTCTTGACTGTACGGTTCTTAATAACCTTGTATATATATAAACGTTTGCTCCTGCGATTGACCAATGGCTGACTGATTAGTCTTTTAATAAAGACACATTTGGATCCACAACTTGTTCCCCGAACCATTTTGTGACAGACTGATGTGTTTGTCTGTAAAAGTTCATCTACAGGTGTTTCTCTAAACAGTCGCAGGTCAGATTTTACACCACCGTACATCTTTTTGAAGTGAAGATGAGCTGGAATGGAGACAGTCGTTTTTGGCAGAACAGCCATGAAGCTATTCCAGCACCTGATTCACAAAACAACTACTGCGATCCAGACTTGAGCTGACTCCAAATCAACACATAACCTGTTAAAATCTGCCTCACTACATATGATATATATCCAGCTATGATGCTTCTCCACATCTTTTCATCATCGTTTGATGAATTATATCCACTAtgattgaaataaaacaaacactgctTGGATT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117477

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007513 False 470 lncRNA 0.39 2 8476961 8515378
TCONS_00008761 False 590 lncRNA 0.40 4 8477025 8515693
TCONS_00007514 False 319 lncRNA 0.38 2 8483819 8515378
TCONS_00008762 False 474 lncRNA 0.38 3 8483837 8515748
TCONS_00008763 True 496 lncRNA 0.38 3 8483837 8515750

Neighbor

gene id symbol gene type direction distance location
XLOC_003919 si:ch211-247n2.1 coding downstream 126016 8303941 ~ 8350945 (-)
XLOC_003918 pimr202 coding downstream 188036 8284686 ~ 8288925 (-)
XLOC_003916 pimr204 coding downstream 205587 8221835 ~ 8271374 (-)
XLOC_003917 si:cabz01021066.1 coding downstream 214856 8239982 ~ 8262105 (-)
XLOC_003915 pimr203 coding downstream 268497 8201842 ~ 8208464 (-)
XLOC_003921 si:ch211-51h4.2 coding upstream 120035 8635785 ~ 8782871 (-)
XLOC_003922 NA coding upstream 467901 8983651 ~ 9523184 (-)
XLOC_003923 CR788237.2 coding upstream 770073 9285823 ~ 9286476 (-)
XLOC_003924 CR788237.1 coding upstream 776531 9292281 ~ 9293411 (-)
XLOC_003925 NA coding upstream 891921 9407671 ~ 9408005 (-)
XLOC_003938 BX324177.10 misc upstream 2823054 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 2851844 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 2854705 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 2865154 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 2868083 11383833 ~ 11384130 (-)
XLOC_003912 NA non-coding downstream 680629 7773832 ~ 7796332 (-)
XLOC_003908 NA non-coding downstream 1127464 7345800 ~ 7349497 (-)
XLOC_003904 CR925817.2 non-coding downstream 1360598 7116247 ~ 7116363 (-)
XLOC_003895 NA non-coding downstream 1677023 6792546 ~ 6799938 (-)
XLOC_003894 BX936438.1 non-coding downstream 1694885 6780708 ~ 6782076 (-)
XLOC_003927 NA non-coding upstream 1789380 10305130 ~ 10328527 (-)

Expression


Co-expression Network