XLOC_003918 (pimr202)


Basic Information

Item Value
gene id XLOC_003918
gene name pimr202
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 8284686 ~ 8288925 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007509
GGACTGTTCCGTCTCTGGTACACTTTAAATCCAGATCCAGAGCTGTTTTCCAGAGCACCTGGGGTCAGGAACACTATTGATTTAGATCCAGAGCCTGCCCCTGGAGTGCATGATCTCCGGAACTCTGTTGATCCAGATCCAGAAAATGTACCTGGAATGTCTAAGCCCTGGAGTACTGTTTATTCTGATCCAGTGCCTGTACCTGAAGTATCCAGGAACCGGAATACTGTTGATCTTGATCCAGATCAAGAGCCTGTACTTGGACTGTCTTGGCTTTGGTACACTTTTGTTCCTGAGCTAGAGTTTGCCCTTGGACGGAATCGTCTCAGAGCCAATTTAAATCCAGATACAGACCCCGTTGCTGGACCATCTGTAGTTCAGAACATGGTAGATCAGGAACCAGAGCCTGTGCCTGGACCATCTAGTCTCCAAGACACGTCCAATGCGAGGTCCTCATCTGCCTTAGGAGCCCCTAATTTTGAGCCAAATACTGgatctttgattggtctctaCGGCTTTGGAGAAATGATAGGATCTGGGAGCTTTGGCTCAACATACAAAGCATTCCGTAAATCTGATGGCAAGCAGgttGCCATCAAGAAGATTCCGCAGAGAAGCAATCCACGTTACATCTCTGTTCCTGGTTGTTCCAGACCTGTGTGTAAAGAAGCAGCGTATATGCTAATGCTGAAACATCCTTCAGCAAGCAAGCATGTGATAGAAATGTATGAGTGGTTTGATCAACCTGGATACATTTCACTCGTCATGGAGTACCCCCAACCTTGCGTATCTCTGCGGGACTATATAATCATGCATGTCAAACTGTCAGAACGGGTTGCACGTTCCCTGCTGCACCAGTTAGTCCAGGCAATGCAGCACTGCATTGACCATGATGTTTCCCACAACGACATGCATCCTGACAACATCCTAGTCAACACAAcgaaggtggagctcaagctgaTTGACTTCGGTTGTGCTACCAATATCAGAGCAGAAATTTATCAAGCTGTCGTCTTGGCAAACATCCGGACCGTAGGCAACATGCTGTATTTAATGGTGCATGGAAAATATCCAGAGTACAGCATTTCAGGAACGGAGCGCCTCCTTATGATTAGTCCCAGTGTATCCAGTGACTGCAGGGATCTGATAGAAAAGTGCATGGAGAGAAAATTGTCAACGTTGGAGGACGTCTTACAGCACCAGTGGATGAAGAAGCAGGAGATGGAGGAGCAGGGATGAAGGAACTTCACACACAAAGCAGCAAAATCTTCAACAAAAAAACGTTCAAAAAATCATCAAAACTCATCTATAAAGAAGCTTTTCCCGATCCAGGACCACCGTCTGTGCTCATAAACACTACAGGATCAGCGTTTCCCCAGGAAACTGCCTCTTTTGAGCTACTCTCCATGGGATCGGCCTTCAGCAGAGACATTACACTGAACAGAATTTCAACAGAGAcatttgttaagctgctttgacaacaTTTGCATTGTATAAGTTttgtaaataaagatgaattgacaTGTA
>TCONS_00007510
tagcaactgatatctgcaggaaggtgactctccaggaacagggctggcCACCCCTGCCCTATACCCTCATCTACTACTCCTTACGTTAGTCTAGTAAATTAGTGTATTTAAATGAGGGAATGTAAACAAATAAGTCAATTGAAgcagttttgtttgtgcttttctGGTTGATAAACCCCTCAGATGGATTGGATTCTGCTTGGTCAGACCCAAGTTATTTAACACAACAAGCTGTATGCTAGTATTGAAACACTGTAGTTTTATTTGTCATGTATAGGaatgttatttttacaattaaataaatgtattcattaattcatttaaggGTAAAGAGCTGCGATTTCAGACATAGCCATTGGTTAACTTGCTTCACAAGTGTTTGATTAGAGTTtaagcaaaactctgcaggacacagaCCCTCCAGGACTCTCCAGTAGCCTTTTTTATAACAAATTTCAGAAGATATCTTTATAAATGTCAGCTTTAATGTCTTATACAGTCTTGATTAACTATCTCTTTCTCCTTGTACAGACTGCAGGGATCTGATAGAAAAGTGCATGGAGAGAAAATTGTCAACGTTGGAGGACGTCTTACAGCACCAGTGGATGAAGAAGCAGGAGATGGAGGAGCAGGGATGAAGGAACTTCACACACAAAGCAGCAAAATCTTCAACAAAAAAACGTTCAAAAAATCATCAAAACTCATCTATAAAGAAGCTTTTCCCGAT

Function

symbol description
pimr202 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103910

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007509 False 1527 mRNA 0.46 6 8284686 8288925
TCONS_00007510 True 727 lncRNA 0.38 2 8284885 8285892

Neighbor

gene id symbol gene type direction distance location
XLOC_003916 pimr204 coding downstream 13312 8221835 ~ 8271374 (-)
XLOC_003917 si:cabz01021066.1 coding downstream 22581 8239982 ~ 8262105 (-)
XLOC_003915 pimr203 coding downstream 76222 8201842 ~ 8208464 (-)
XLOC_003914 uox coding downstream 116675 8160894 ~ 8168011 (-)
XLOC_003913 ttll7 coding downstream 158423 7981243 ~ 8126263 (-)
XLOC_003919 si:ch211-247n2.1 coding upstream 15016 8303941 ~ 8350945 (-)
XLOC_003920 CR847563.2 coding upstream 188036 8476961 ~ 8515750 (-)
XLOC_003921 si:ch211-51h4.2 coding upstream 346860 8635785 ~ 8782871 (-)
XLOC_003922 NA coding upstream 694726 8983651 ~ 9523184 (-)
XLOC_003923 CR788237.2 coding upstream 996898 9285823 ~ 9286476 (-)
XLOC_003938 BX324177.10 misc upstream 3049879 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 3078669 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 3081530 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 3091979 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 3094908 11383833 ~ 11384130 (-)
XLOC_003912 NA non-coding downstream 488354 7773832 ~ 7796332 (-)
XLOC_003908 NA non-coding downstream 935189 7345800 ~ 7349497 (-)
XLOC_003904 CR925817.2 non-coding downstream 1168323 7116247 ~ 7116363 (-)
XLOC_003895 NA non-coding downstream 1484748 6792546 ~ 6799938 (-)
XLOC_003894 BX936438.1 non-coding downstream 1502610 6780708 ~ 6782076 (-)
XLOC_003924 CR788237.1 non-coding upstream 1003356 9292281 ~ 9293411 (-)
XLOC_003925 NA non-coding upstream 1118746 9407671 ~ 9408005 (-)

Expression


Co-expression Network