XLOC_003897 (ddx49)


Basic Information

Item Value
gene id XLOC_003897
gene name ddx49
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6869312 ~ 6880725 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007459
TAATTCACGCGACTGACATATGCTCACACGAGGAAGATTGTTGTCAATTTAGCGTCTCTCAAAGTAACAATATACGGTCTAGTTTATGTTTTTGGTGTTTCGTTTTTAACTAAGCCGGTAAGAATGGCCACGTTTGAGTCTCTCGGGCTGTCTGAGTGGCTGATCCAGCAGTGTAAGCAGATGGGCATCAGCCGACCGACCGCTGTACAGGAGAAGTGTATCCCTGCTATATTAGACGGTCGGGATTGCATGGGCTGTGCAAAAACTGGAAGTGGAAAAACAGCAGCATTTGTTCTTCCGGTACTGCAGAAGTTGTCCGAGGACCCTTATGGTGTTTTCTGCTTAGTGTTAACACCCACCAGAGAGCTTGCTTACCAAATTGCAGAACAATTTCGAGTTTTAGGGAAGCCACTTGGTTTAAAAGACTGTATCATTGTGGGAGGAATGGACATGGTTACTCAGGGTTTGGAGTTGTCAAAAAAGCCACATGTTGTTGTTGCCACACCGGGACGACTTGCTGATCACATTCGCAGCTCTGACACAATTAACCTGAACAGAATCCAATTTCTAATCATGGATGAAGCTGATCGTCTTCTGGAGCAGGGCTGTACTGATTTTACTAAAGATTTAGAGGTCATTCTCAGTGCGGTGCCAGTAAAGCGGCAGACTCTTCTGTTCAGTGCCACGCTCACAGACACGCTGCAGCAGCTGCAGAGCATCGCTATGAACAGGCCCTTCTTCTGGGAGCATAAATCAGATGTGCAAACAGTGAAAGAACTGGATCAGAGATTCATCCTCACTCCTGAGAAAGTTAAAGATGCTTACCTGGTCCATCTCATCCAAACCTTCCAGGATGAACATGATGATTGGTCTATCATAATATTCACCAACACATGCAAGAGCTGTCAGATACTCACTATGATGCTGCGGGAATTCAATTTCCCAACCATCTCTCTGCACTCAATGATGAAGCAGAGACAGCGTTTTGCCAACCTTGCAAAATTCAAGTCTAACGTCTTCAAAATTCTCATAGCCACAGATGTTGCTGCCAGGGGTTTGGATATTCCCACAGTTCAAGTTGTTATTAATCACAACACACCCGGTTTGCCAAAAATCTACATCCACAGAGTAGGACGAACCGCTCGAGCTGGCCGGAATGGAGTATCAATCACTCTAGTTACACAGTATGACATTCACCTTATCAATGCCATAGAGGAACAAAACCAGACGAAACTGAAAGAGTTTCCTATTGAAGAAAAAGAGGTGCTGAAGATCCTTACGCAGGTCAATGTAACGAGACGGCAGTGTGAAATTAAATTAGAGTCGACAGATTTTGATGAGAAAAAGAAGATAAACAAAAGGAAGCAGATGATTTTGGATGGAAAAGATCCTGATTtggaagaaaaaaggaaaaatgaaTTAGAGAAGATCCGAGGAAAAAATAAGAAACTCAAAGGAAAAAACCCCCAGAgcaaaaaggaaaagaaaaaacatgAGAAAAGTGCAAAAGCGACAGAAGTTGGCTCTTAATTTCCTCTCTTTTGTACAATTTAATATTATGTATATAGCGTGAATATGcttatatttaataaacatgtgATGCAGTGTTGACTGTGTTgctacatgaatgaa
>TCONS_00007460
GAAGAATGGGATGCATtggaaaattataaattatatgaaATTCAACCTGAAATCTCACAcagaagacattttaagactagaTTTGATCAAGTTGTTTTTACTAGATGTTGTATTGGACAGAAGAATAACCCATGTTTTTTgttccaaggtgaaaaccctaagaagtcaagttattatttgttgttcctaaaacttaaataggcgacaagacttttgtcaggtagaatATATACACTTATTATATATCTAAAGCATGCTATAAAATTTTACAATTGTTAATTCTTTTATAGAAATTAGAGTCGACAGATTTTGATGAGAAAAAGAAGATAAACAAAAGGAAGCAGATGATTTTGGATGGAAAAGATCCTGATTtggaagaaaaaaggaaaaatgaaTTAGAGAAGATCCGAGGAAAAAATAAGAAACTCAAAGGAAAAAACCCCCAGAgcaaaaaggaaaagaaaaaacatgAGAAAAGTGCAAAAGCGACAGAAGTTGGCTCTTAATTTCCTCTCTTTTGTACAATTTAATATTATGTATATAGCGTGAATATGcttatatttaataaacatgtgATGCAGTGTTGACTGTGTTgctacatgaa
>TCONS_00007461
CAGTAAAGCGGCAGACTCTTCTGTTCAGTGCCACGCTCACAGACACGCTGCAGCAGCTGCAGAGCATCGCTATGAACAGGCCCTTCTTCTGGGAGCATAAATCAGATGTGCAAACAGTGAAAGAACTGGATCAGAGATTCATCCTCACTCCTGAGAAAGTTAAAGATGCTTACCTGGTCCATCTCATCCAAACCTTCCAGGATGAACATGATGATTGGTCTATCATAATATTCACCAACACATGCAAGAGCTGTCAGATACTCACTATGATGCTGCGGGAATTCAATTTCCCAACCATCTCTCTGCACTCAATGATGAAGCAGAGACAGCGTTTTGCCAACCTTGCAAAATTCAAGTCTAACGTCTTCAAAATTCTCATAGCCACAGATGTTGCTGCCAGGGGTTTGGATATTCCCACAGTTCAAGTTGTTATTAATCACAACACACCCGGTTTGCCAAAAATCTACATCCACAGAGTAGGACGAACCGCTCGAGCTGgaaggctgaaaaacggcATATATTTGTtcagagccgtgtctgagtcgactagatcctttcagaggtgcacccagctctGCCGGAATGGAGTATCAATCACTCTAGTTACACAGTATGACATTCACCTTATCAATGCCATAGAGGAACAAAACCAGACGAAACTGAAAGAGTTTCCTATTGAAGAAAAAGAGGTGCTGAAGATCCTTACGCAGGTCAATGTAACGAGACGGCAGTGTGAAATTAAATTAGAGTCGACAGATTTTGATGAGAAAAAGAAGATAAACAAAAGGAAGCAGATGAT

Function

symbol description
ddx49 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be involved in rRNA processing. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human DDX49 (DEAD-box helicase 49).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-031030-3 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be involved in rRNA processing. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human DDX49 (DEAD-box helicase 49).

Ensembl:

ensembl_id ENSDARG00000012899

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007459 False 1632 mRNA 0.42 13 6869312 6880725
TCONS_00007460 False 604 lncRNA 0.30 2 6869316 6870035
TCONS_00007461 True 799 mRNA 0.44 9 6869687 6877973

Neighbor

gene id symbol gene type direction distance location
XLOC_003896 lsm4 coding downstream 838 6859876 ~ 6868474 (-)
XLOC_003895 NA coding downstream 69374 6792546 ~ 6799938 (-)
XLOC_003894 BX936438.1 coding downstream 87236 6780708 ~ 6782076 (-)
XLOC_003893 NA coding downstream 413012 6455034 ~ 6456300 (-)
XLOC_003892 larp6b coding downstream 416820 6446235 ~ 6452492 (-)
XLOC_003898 comp coding upstream 60664 6941389 ~ 6974022 (-)
XLOC_003899 si:ch211-253b8.2 coding upstream 96543 6977268 ~ 6985463 (-)
XLOC_003900 zgc:173548 coding upstream 105864 6986589 ~ 6989598 (-)
XLOC_003901 cdh27 coding upstream 121223 7001948 ~ 7030047 (-)
XLOC_003902 si:ch211-253b8.5 coding upstream 158534 7039259 ~ 7078475 (-)
XLOC_003938 BX324177.10 misc upstream 4458079 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 4486869 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 4489730 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 4500179 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 4503108 11383833 ~ 11384130 (-)
XLOC_003891 NA non-coding downstream 437964 6429973 ~ 6431348 (-)
XLOC_003887 NA non-coding downstream 544755 6316654 ~ 6324557 (-)
XLOC_003904 CR925817.2 non-coding upstream 235522 7116247 ~ 7116363 (-)
XLOC_003908 NA non-coding upstream 465075 7345800 ~ 7349497 (-)
XLOC_003912 NA non-coding upstream 893107 7773832 ~ 7796332 (-)
XLOC_003920 CR847563.2 non-coding upstream 1596236 8476961 ~ 8515750 (-)
XLOC_003922 NA non-coding upstream 2102926 8983651 ~ 9523184 (-)

Expression


Co-expression Network