XLOC_003900 (zgc:173548)


Basic Information

Item Value
gene id XLOC_003900
gene name zgc:173548
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 6986589 ~ 6989598 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007466
gaagaagaaaaagcagCGTCAGAAAAAGGACTAGAAAAAGTTGTTGCAACTTGCAAGAGGCTTAAAACGCTGTCATTTCTAACAACAATAACTTAACCACGATGGCATTGGGCTCTTTTTATTCACTTTTGGTGAGTCGCATGATGGCAGTAGCCGATGAAATATTCGACTCTGTAAAAGAGAGCATAATTGATTATGAGCAGGAGATTGAACGACTGAGGCAGGAGAACTGCTGTCTGAGGAGCAGAAGATGCAGGTGTGTGGAAACATGCAATGATACTTCAAGTCCGAGAGATGAAGTACTGCAGGGTCAGAGCGGTTCACAGCTCTCAGAAATTCAAATGAAATTGGAGGTTGCCACTGTGATGTCCCCTGATCCTTCGGGTCAAGCTGTTTCCATTGTTTCTTCCCTTTCTGAAGACGTCACTGAGCAGGAACCAGATCAGTGCCTCACGATTCTGCCAAAGGAAATGGTGAAGAGTGAAGATAGTGGCGGTACAGATGCATTGATCACAGTTAAGTCTGAGCTGTTTGATCATCAAACCAGTGAAATGAATTCATTTGCAGCGCTGCCTGACCGCATCTATCAAGTTGACTATCTGATAAGTGAACAAGACGTTCAAACTGACCTCGAAACCTTTAACAAGAAGATCCGGAAGGGTCGGCAAAAGCAGAAGAGTGTGATATGCAAGATTTGCGGAAAGTCTTTCAAGAGTAAAGAACATTTGCAGAGTCACGTAATATTGCATCAGAACGAGAGGCCTTTCTCCTGTGCCTCATGCGGGATTCGTTTTAAGACTAAATTCAACTTGAAAGAACACGAGCGAATCCATTCAGGGGACTATCGATACAGCTGCCCGCGGTGTGGAAGAGGCTTTTCCCGATCGAATCATGTCAGAAACCATCTCAAATCTGCGCGCTGTTTTCTGATTGAGTCTCTAAACCACTAACAAGTACTACATTTTAGTACTTAATTGGAGATAAGACACTAAAACAAAAGAGAGATTTTGATTGAAAACAAGTTACTTGATATTGGTCGCTCTTGGTCTGACTTGTTTGGTTGTTGGATTTCAGAAATGATCATCTTTAAAGCTCTGGAATATGTCTTTTATAATTTCGATGTCATTTTCTGGTCAAATTGTTTCTGTATCAAATAATCTTCCACCTTTCATGTTTACCTTAGTTTATACTGTAGTGAAATGTTCAAAATATTTGAGATGACAATCGGGGTGATTCTGTTATATGGAATTATAAAAGTTCTGGAAAAATAAACTAAAGTTCTGAAAAAGTCTTGA
>TCONS_00007467
gaagaagaaaaagcagCGTCAGAAAAAGGACTAGAAAAAGTTGTTGCAACTTGCAAGAGGCTTAAAACGCTGTCATTTCTAACAACAATAACTTAACCACGATGGCATTGGGCTCTTTTTATTCACTTTTGGAGATTGAACGACTGAGGCAGGAGAACTGCTGTCTGAGGAGCAGAAGATGCAGGTGTGTGGAAACATGCAATGATACTTCAAGTCCGAGAGATGAAGTACTGCAGGGTCAGAGCGGTTCACAGCTCTCAGAAATTCAAATGAAATTGGAGGTTGCCACTGTGATGTCCCCTGATCCTTCGGGTCAAGCTGTTTCCATTGTTTCTTCCCTTTCTGAAGACGTCACTGAGCAGGAACCAGATCAGTGCCTCACGATTCTGCCAAAGGAAATGGTGAAGAGTGAAGATAGTGGCGGTACAGATGCATTGATCACAGTTAAGTCTGAGCTGTTTGATCATCAAACCAGTGAAATGAATTCATTTGCAGCGCTGCCTGACCGCATCTATCAAGTTGACTATCTGATAAGTGAACAAGACGTTCAAACTGACCTCGAAACCTTTAACAAGAAGATCCGGAAGGGTCGGCAAAAGCAGAAGAGTGTGATATGCAAGATTTGCGGAAAGTCTTTCAAGAGTAAAGAACATTTGCAGAGTCACGTAATATTGCATCAGAACGAGAGGCCTTTCTCCTGTGCCTCATGCGGGATTCGTTTTAAGACTAAATTCAACTTGAAAGAACACGAGCGAATCCATTCAGGGGACTATCGATACAGCTGCCCGCGGTGTGGAAGAGGCTTTTCCCGATCGAATCATGTCAGAAACCATCTCAAATCTGCGCGCTGTTTTCTGATTGAGTCTCTAAACCACTAACAAGTACTACATTTTAGTACT
>TCONS_00007468
gaagaagaaaaagcagCGTCAGAAAAAGGACTAGAAAAAGTTGTTGCAACTTGCAAGAGGCTTAAAACGCTGTCATTTCTAACAACAATAACTTAACCACGATGGCATTGGGCTCTTTTTATTCACTTTTGGTGAGTCGCATGATGGCAGTAGCCGATGAAATATTCGACTCTGTAAAAGAGAGCATAATTGATTATGAGCAGGAGATTGAACGACTGAGGCAGGAGAACTGCTGTCTGAGGAGCAGAAGATGCAGATACTTCAAGTCCGAGAGATGAAGTACTGCAGGGTCAGAGCGGTTCACAGCTCTCAGAAATTCAAATGAAATTGGAGGTTGCCACTGTGATGTCCCCTGATCCTTCGGGTCAAGCTGTTTCCATTGTTTCTTCCCTTTCTGAAGACGTCACTGAGCAGGAACCAGATCAGTGCCTCACGATTCTGCCAAAGGAAATGGTGAAGAGTGAAGATAGTGGCGGTACAGATGCATTGATCACAGTTAAGTCTGAGCTGT

Function

symbol description
zgc:173548 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070928-39 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

Ensembl:

ensembl_id ENSDARG00000070048

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007466 False 1295 mRNA 0.40 2 6986589 6989598
TCONS_00007467 False 899 mRNA 0.44 3 6986913 6989598
TCONS_00007468 True 511 mRNA 0.44 2 6987353 6989598

Neighbor

gene id symbol gene type direction distance location
XLOC_003899 si:ch211-253b8.2 coding downstream 1126 6977268 ~ 6985463 (-)
XLOC_003898 comp coding downstream 12567 6941389 ~ 6974022 (-)
XLOC_003897 ddx49 coding downstream 105864 6869312 ~ 6880725 (-)
XLOC_003896 lsm4 coding downstream 118115 6859876 ~ 6868474 (-)
XLOC_003895 NA coding downstream 186651 6792546 ~ 6799938 (-)
XLOC_003901 cdh27 coding upstream 12350 7001948 ~ 7030047 (-)
XLOC_003902 si:ch211-253b8.5 coding upstream 49661 7039259 ~ 7078475 (-)
XLOC_003903 bmp7a coding upstream 118200 7107798 ~ 7147540 (-)
XLOC_003904 CR925817.2 coding upstream 126649 7116247 ~ 7116363 (-)
XLOC_003905 smim7 coding upstream 161981 7151579 ~ 7156693 (-)
XLOC_003938 BX324177.10 misc upstream 4349206 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 4377996 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 4380857 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 4391306 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 4394235 11383833 ~ 11384130 (-)
XLOC_003894 BX936438.1 non-coding downstream 204513 6780708 ~ 6782076 (-)
XLOC_003893 NA non-coding downstream 530289 6455034 ~ 6456300 (-)
XLOC_003891 NA non-coding downstream 555241 6429973 ~ 6431348 (-)
XLOC_003887 NA non-coding downstream 662032 6316654 ~ 6324557 (-)
XLOC_003908 NA non-coding upstream 356202 7345800 ~ 7349497 (-)
XLOC_003912 NA non-coding upstream 784234 7773832 ~ 7796332 (-)
XLOC_003920 CR847563.2 non-coding upstream 1487363 8476961 ~ 8515750 (-)
XLOC_003922 NA non-coding upstream 1994053 8983651 ~ 9523184 (-)

Expression


Co-expression Network