XLOC_003905 (smim7)


Basic Information

Item Value
gene id XLOC_003905
gene name smim7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7151579 ~ 7156693 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007478
AAAAGGCGCTTGTCAACCGCCAAATAAACTCAAcaacaaagaagaagaagaagaagaactgaGACGGATATAATCAACCAAAATGATTGGAGAtcttttaatttttggCACCCTGCTAATGAACGCTGGTGCTGTGCTCAACTTTAAACTAAAGAAGAGAGAAACACAGTCTCAAGGATTTGGCGATGACTCTGGATCATCCAGCACTGGTGAAAACATCAGGGAGTTTTTGCTGAGTCTGCGGTACTTTCGCATATTCATTGCCCTTTGGAATATTTTCATGATGTTTTGCATGATCGTgtTATTTGGATCATAATACATGGCTGTTACTTTGAGGTTCTCTGCAGATGCAAACTGTGGTCATACAGCATCATGCAGATTTCTTCTAACAATGCTGTgcaatatacatgtttttatctaAGGTCTTTCTAGACATCTGTATATTTTGTACAAAAACGTGTGAATATTACTTTATGGGGATTAAACGGGGGTGGAACAAATTGAAGTaacttcaaataataaaaaagtttagcTGTATACAGTTATGAGCTTTAATAGGCTTCTTAGTAAGTGATGTGATGTTGTGCATCGAGGCTTTGAAGCATGTATCAAATCTCAATGATCGCAGTGAGCGGGGTACTGGAGCTTGATTCATTTTGCCATAATCAtatgatcagtgacgtccgaagcttcattttcgcctatacccacatgactgcttcgaattttgattcaaaggtttaaccACCTTTtggttagtaaagtgtatagcgagagattaggtgttgattacatacatttctgcTGTTTCGAAGTactgcaccagtcccacacaccagtaattcaactgaaatacaataataattcgTAGTAAAAAGCTTTTGGACTATACTAAAGTCTGTTATTCTTTAACTTATTTCAAAGAAGGCCACTGCATATTGTagtaagtgtaacggaggccagctgagCTGGCGAGTGCAGCCCATAAGCCTCACTCTGATAGCCTCCCATACAGGAACCATCAGTTCACTCCCTATTCAAAACAAGTGGATAGGAGTATGACAGACTGAAATATGAAATATCCAATATCTTGGATTTTACTAGTCAACAATAGTGTTATATAAAGCatgttatatgtaaaaaaaaaaaaaaaacctacaataattgagtaatttgtttatattaccgTTGTAtgactacatgaatgagttggtcagttgtgaacatttgacattttttgcaacacagtgctttcccacactttagaCAACATGGATCCTTATCGAGCTCGGATTTAAAAAGCTTCAAGAAACTAATCTTTTTCCAATACACTTGAATTGGAaagttcagaaagcttcatttcaccattaCCACTacgtagcacacacacacaaaaaaaaaaattattattctaCCCTGAATTAATAAGGTGAACCTAATGGGCAATGTTTTCTACAACCCCTGTATAGGTGGCGTAAACTATTTGctatttgtgaaataaaataattcctTCGGTAA
>TCONS_00007479
caacaaagaagaagaagaagaagaactgaGACGGATATAATCAACCAAAATGATTGGAGAtcttttaatttttggTGTAAATACTGTGTGTTTTCTTTTCCACGTCACAACTTTCAGCACCCTGCTAATGAACGCTGGTGCTGTGCTCAACTTTAAACTAAAGAAGAGAGAAACACAGTCTCAAGGATTTGGCGATGACTCTGGATCATCCAGCACTGGTGAAAACATCAGGGAGTTTTTGCTGAGTCTGCGGTACTTTCGCATATTCATTGCCCTTTGGAATATTTTCATGATGTTTTGCATGATCGTgtTATTTGGATCATAATACATGGCTGTTACTTTGAGGTTCTCTGCAGATGCAAACTGTGGTCATACAGCATCATGCAGATTTCTTCTAACAATGCTGTgcaatatacatgtttttatctaAGGTCTTTCTAGACATCTGTATATTTTGTACAAAAACGTGTGAATATTACTTTATGGGGAT
>TCONS_00007480
TCAACCAAAATGATTGGAGAtcttttaatttttggCACCCTGCTAATGAACGCTGGTGCTGTGCTCAACTTTAAACTAAAGAAGAGAGAAACACAGTCTCAAGGATTTGGCGATGACTCTGGATCATCCAGCACTGGGGAACTCCAGGCCCAGCTCGTGGCTTCGCAGCCTCCTCGTATGATACCGCTACCATTCAA

Function

symbol description
smim7 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM7 (small integral membrane protein 7).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060810-180 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM7 (small integral membrane protein 7).

Ensembl:

ensembl_id ENSDARG00000074848

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007478 False 1518 mRNA 0.37 5 7151579 7156693
TCONS_00007479 False 490 mRNA 0.38 5 7152616 7156660
TCONS_00007480 True 197 mRNA 0.47 4 7155014 7156620

Neighbor

gene id symbol gene type direction distance location
XLOC_003903 bmp7a coding downstream 4039 7107798 ~ 7147540 (-)
XLOC_003904 CR925817.2 coding downstream 35216 7116247 ~ 7116363 (-)
XLOC_003902 si:ch211-253b8.5 coding downstream 73104 7039259 ~ 7078475 (-)
XLOC_003901 cdh27 coding downstream 121532 7001948 ~ 7030047 (-)
XLOC_003900 zgc:173548 coding downstream 161981 6986589 ~ 6989598 (-)
XLOC_003906 zgc:113223 coding upstream 96384 7253077 ~ 7261717 (-)
XLOC_003907 apc2 coding upstream 124547 7281240 ~ 7320211 (-)
XLOC_003908 NA coding upstream 189107 7345800 ~ 7349497 (-)
XLOC_003909 si:dkey-197i20.6 coding upstream 194233 7350926 ~ 7355995 (-)
XLOC_003910 vtg3 coding upstream 202803 7359496 ~ 7380688 (-)
XLOC_003938 BX324177.10 misc upstream 4182111 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 4210901 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 4213762 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 4224211 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 4227140 11383833 ~ 11384130 (-)
XLOC_003895 NA non-coding downstream 351641 6792546 ~ 6799938 (-)
XLOC_003894 BX936438.1 non-coding downstream 369503 6780708 ~ 6782076 (-)
XLOC_003893 NA non-coding downstream 695279 6455034 ~ 6456300 (-)
XLOC_003891 NA non-coding downstream 720231 6429973 ~ 6431348 (-)
XLOC_003912 NA non-coding upstream 617139 7773832 ~ 7796332 (-)
XLOC_003920 CR847563.2 non-coding upstream 1320268 8476961 ~ 8515750 (-)
XLOC_003922 NA non-coding upstream 1826958 8983651 ~ 9523184 (-)
XLOC_003923 CR788237.2 non-coding upstream 2129130 9285823 ~ 9286476 (-)

Expression


Co-expression Network