RNA id: TCONS_00007480


Basic Information

Item Value
RNA id TCONS_00007480
length 197
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_003905
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7151579 ~ 7156693 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAACCAAAATGATTGGAGAtcttttaatttttggCACCCTGCTAATGAACGCTGGTGCTGTGCTCAACTTTAAACTAAAGAAGAGAGAAACACAGTCTCAAGGATTTGGCGATGACTCTGGATCATCCAGCACTGGGGAACTCCAGGCCCAGCTCGTGGCTTCGCAGCCTCCTCGTATGATACCGCTACCATTCAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060810-180 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM7 (small integral membrane protein 7).

Ensembl:

ensembl_id ENSDART00000172823

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007460 lncRNA downstream 284979 6869316 ~ 6870035 (-) False XLOC_003897
TCONS_00008754 lncRNA downstream 355076 6792546 ~ 6799938 (-) True XLOC_003895
TCONS_00008753 lncRNA downstream 698714 6455034 ~ 6456300 (-) True XLOC_003893
TCONS_00008752 lncRNA downstream 723666 6429973 ~ 6431348 (-) True XLOC_003891
TCONS_00008751 lncRNA downstream 723882 6429973 ~ 6431132 (-) False XLOC_003891
TCONS_00008451 lncRNA upstream 189180 7345800 ~ 7349497 (-) False XLOC_003908
TCONS_00008755 lncRNA upstream 189306 7345926 ~ 7349386 (-) False XLOC_003908
TCONS_00008756 lncRNA upstream 189306 7345926 ~ 7349427 (-) True XLOC_003908
TCONS_00007486 lncRNA upstream 205804 7362424 ~ 7365383 (-) True XLOC_003910
TCONS_00008757 lncRNA upstream 617212 7773832 ~ 7775701 (-) False XLOC_003912
TCONS_00007476 mRNA downstream 7474 7112593 ~ 7147540 (-) True XLOC_003903
TCONS_00007475 mRNA downstream 15459 7107798 ~ 7139555 (-) False XLOC_003903
TCONS_00007474 mRNA downstream 76539 7050129 ~ 7078475 (-) True XLOC_003902
TCONS_00007473 mRNA downstream 76622 7040868 ~ 7078392 (-) False XLOC_003902
TCONS_00007472 mRNA downstream 104189 7039259 ~ 7050825 (-) False XLOC_003902
TCONS_00007481 mRNA upstream 96457 7253077 ~ 7261717 (-) True XLOC_003906
TCONS_00007482 mRNA upstream 124620 7281240 ~ 7320211 (-) True XLOC_003907
TCONS_00007483 mRNA upstream 194306 7350926 ~ 7355995 (-) True XLOC_003909
TCONS_00007484 mRNA upstream 202876 7359496 ~ 7380688 (-) False XLOC_003910
TCONS_00007485 mRNA upstream 202880 7359500 ~ 7380674 (-) False XLOC_003910
TCONS_00007477 other downstream 38651 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007463 other downstream 206996 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007456 other downstream 372938 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007441 other downstream 948425 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007438 other downstream 1082948 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007494 other upstream 954749 8111369 ~ 8126195 (-) True XLOC_003913
TCONS_00007548 other upstream 4168902 11325522 ~ 11331050 (-) False XLOC_003936
TCONS_00007549 other upstream 4174105 11330725 ~ 11331090 (-) True XLOC_003936
TCONS_00007551 other upstream 4182184 11338804 ~ 11339100 (-) True XLOC_003938
TCONS_00007552 other upstream 4210974 11367594 ~ 11367890 (-) True XLOC_003942

Expression Profile

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