XLOC_003910 (vtg3)


Basic Information

Item Value
gene id XLOC_003910
gene name vtg3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7359496 ~ 7380688 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007484
ACCACCTCTGGACCTCATCATGTGGCGGCTGTGTCTCTGTCTCCTGGTAGCCCTGGCTGCCAGCGAGATGGCAAATTATGAGCCTTTTCTGAACTCGAAAAAAACATACGAGTATAAATATGAAGGATTGGTACAAGTGGGACGGGAACTGCCACACCTGGTTGAATCAGCGCTGAAACTGAGGTGCACTTTTAAAATCATTGGAGAGTCACCACACACCTTTGTCCTTCAGGTCTCAAATGTAGACTTTGAAGATTTTAATGGCATACCTGGGAAAAGTGTCTTCAGCCCTTCCAAAAACATCACTAAGCATCTGTCTGCCGAGATCAGCCAGCCAATCATTTTTGAATATTCTAAaggacaaattactgacattcgCACAGCACCTGGAGTCTCAAACACAGTTGTGAATATTGTGAGGGGGATCCTTGGATTTTTACAAGTCACGGTCAAAACCACACAAAGTTTTTACGAACTAATTGAGTTGGGAATTCATGGTTTGTGTCAGAGCAGTTACACTGTTGATGAAGACTCTAACGCAAAAGAGTTGATAGTAACACGAATTGTTGATATCACCAACTGTCAACAGCCAGCATCTTTGTACAGAGGTATGGCTCTTGCACCTGAAGACAAACTTAGCAAACAGAGAGGCGAAAGCGTTGTTTCCACTGTGAAACACACCTACACAGTGAAGTCCACAGCAGACGGTGGTCAGATTACTAAAGCATTTGCTCAGGAGCGCCAATATTTCTCTCCGTTCAATGTAAAGGGAGGAAACTTCCGAATGTTGGCATTGCGGGACATTGAACTTCTTAAAGTTTCAGACACAACTGACAAAGTAGTGACTGGACAGGTGCAGAGCAGAGGCAACCTGATGTATAAGACAAATAAGGACCTCAAACCAATACCTGTTGTGATGCTTAACCTGAACGACCCAGTGCCCAAGATTTTAGATTTAATCAAGCGCCTCGCACAGGCTAATATATATCATGTGGACAGTGAAACCAGCACAGAAATTCTGGACCTAATTCAGTTGATGCGGGTAACAACACTTGATAATCTAGAGCATTTATGGAAGCAGGTCTCAGGAAATGATGAGCACAGgcGGTGGTTCTTGGACTTGGTTGTGGAGGTAACAGATGAAAGAATTCTCAAATTCCTTGAGGCCAGATACAAAGCAGGAGACATCACAGCGAATGAGGCAGGACAAGCACTGGTAGTGGCATTTAACCACTTGTCCGCTGAGCCTGTGTCGGTGGCATTAGCTCAGGAGTTCCTGACCATTCCTTTCAGTAAATCCCATCCTCTCCTGTGGAACACTGTAGTTTTGGCATATGGATCTCTTGTACACAGATACTGTGTGTATACTGACCCCTGCCCTATCACTGTGGTACAGCCATTGCTGAATATGGCTGCAAGTAGCCTAAGTAAAAACTCTGAGGATGAAATGGTCCTTGCGCTGAAGTCCTTGGGAAACGCAGCTCATCTTTCCAGCTTCAAGACTCTCCTCAAGTTCCTTCCTGGATACTCCAATGGAGCTGAAAAACTTTCCACCAGAGTGCAGGGAGCTGCAGTCCAAGCATTTAGGCTGCTTGCAAGCAGAGCCTCCCACAGTGTACAGGATATTGTCTTAAACCTCTTCGTACAGAAACATTTACCAGCTGAAATCCGCATGCTGGCCTGCATAGTTCTTCTAGAGACCAAGCCGTCCACAGCTCTGATTTCAGTAGTAAGTGAGGTCCTTCTAGAAGAGGCTGATCTGCAGGTTGCCAGTTTCTCCTACTCTCTGCTCAAAGGCTTTGCCAAGTCCCGTACCCCTGATAATCAACATCTATCTATTGCCTGTAATATTGCCATGAAGATTCTAACCCGTAAACTTGGCCACTTGAGTTACCGCTACAGCAAGAACCTGCACTTTGACTGGTTCCATGATGACTTTTTATTTGGGACATCTGCTGATGTTTATATGCTTCAGAATGAAAGTCCCATCCCCACAAAACTTATGCTTAAGGGAAAATTTCATTTCATTGGGAGAATACTGCAATTTCTTGAGTTTGGTATCCGTGCAGATGGACTCAAAGATCTGTTTGCTGGAAAAATCCCAGAACTCACGAAAGATTTAGGAATCAGCGATTTGGCTTCCATATTGAAAATTCTCTCTAACTGGCAGAGCCTACCAAAAGACAAGCCTCTTTTGACAGCTTATGCAAGAGTTTTTGGACAGGAAGCCTTTTTAATGGATGTAAGCAGAGACTCAGTTCAAAGCATCATAAAGTCTTTCAGTCCTTCTGCAGGAAAGGAGAGTAAAGTTTGGGAAAGGATTCAAGATGTTCAGAAAGGGACTTCATGGCACTGGACTAAGCCGCATCTTGTGTATGAGGCTCGGTTCATACAGCCGACATGTCTGGGTCTCCCAGTTGAAATCAGCAAATATTATTCCGTAGTAAATGCTGTTACAATGAAAGCAAAAGCTGAAATAAATCCTCCTCCAAAGGAACATCTGGGTGAACTGCTAAGCTCAGACATTTCCATGCAGACAGATGGCTTTATCGGCGTGACAAAGGATCATTTTCTCTTCCATGGAATCAACACTGATCTTTTTCAGTGTGGAACTGAGCTGAAAAGTAAGGTTTCAATGGGCCTGCCGTGGGCATTTGACCTGAAAATAAATCCGAAAGAGCAAACGTATGAAATGAACTTGACTCCAAGCAAATCGGTCACCGAATTATTTTCAGTCAGTTCTAATGTGTATGCTGTTTTGAGAAACATTGAAGACCCAACCTCATCTAAAATAACACCCATGATGCCTGAGACAGGGGAGTCCTGGCAGGGTGTGCCTCTGAGAATGTTACCCCCTTTAAGGGATGAACAGACCAAAAAATCTGGAATGAAATTCAGGCAATGTGCTGAAGCCAAAATTTATGGAACTGCACTCTGCATTGAGGCAGAAGCCAAACGTGCACACTATCTTCACGAATATCCTCTGTATTACTTACTGGGTGATACTCACTTTTCATACAGTTTAGAACCAGCAAAGGATGCAAAACCCATTGAAAAAATTCAGATTCAGGTCTCTGCCAGCAGACAACATCCTTCAGTAATGAGTGGAATGGTGAATCTCAACCAAAGGGTATTTAAGGAGACAAGAGATGAGAACACCTCCTGTGAGGAACGCAAAACATCCAGTTCACTCCCAGTAACTCAGGATCTAGATGTCACTCCAGACCCGGTAGTCACAGTAAAAGCACTTAGTTTAAGTCCACAAGCAAAACCCCTTGGCTATGAAGGCGTAGCCTTTTATCTGCCAACTGCCCAAAAAGACGACATTGAAATGATCGTCTCTGAAGTTGGTGAAGAAGCAAACTGGAAAATGTGTGCCAATGCACATTTTGATAAGACTCATACATCAGCAAAGGCTCATCTCAGATGGGGTGCAGAGTGTCAAACATATGATGTTTCTATGAGAGTGTCCGCAGCGTGCCAACCAGAGTCCAAACCATCTATAAGCACAAAGATTAACTGGGGGACTCTGCCCTCAGTATTCACAACAGTTGGTCAAATAGTTCAAGAGTATGTACCTGGCGTGTCTTACATTATGGGTTTCTACCAGAAAAAGGAGGAAAACCCAGAACGGCAGGCATCTGTCATCGTTGTAGCATCCTCACCAGAGACCTTTGACCTGAAAGTGAAAATTCCAGAGCGAACTATCTACAAAAAGAAAATTCCCTCACCAATTGAACTTTTGGGGATCGAAGCTGCAAATCTCACCATGTCAACTTAACAGGCTGATGTCATAGAACATTTCTGGAGGACTAAACTGACAACGTGAAATGAATGAATCATCAAATGTTGTGAATTGTTTGTACATTCCGGACATTTGATTAATTATTGATTTGGATACTAAATATGTGCTTAAAAGCAACATATGTTAAGTACTCCAACAAATAAAACATGCATGAAGAGATCATCTGTgggattaatttattttatgatagTTCATCATAATCCAGCCTAGATAGATTTACTTGTAGAGTCTCAACAACATTAATCTTTATGTTCAGAATGTTAATGAGATGGCACAGACTAGCAACACCTGAAAAACAAATTATGAGTGTACAGCCTAGCTTCATGGGCTGCTTCCAGTGGAACCAATTGGAAATAAATATCTTTAGTTTTGTGAAA
>TCONS_00007485
TCATCATGTGGCGGCTGTGTCTCTGTCTCCTGGTAGCCCTGGCTGCCAGCGAGATGGCAAATTATGAGCCTTTTCTGAACTCGAAAAAAACATACGAGTATAAATATGAAGGATTGGTACAAGTGGGACGGGAACTGCCACACCTGGTTGAATCAGCGCTGAAACTGAGGTGCACTTTTAAAATCATTGGAGAGTCACCACACACCTTTGTCCTTCAGGTCTCAAATGTAGACTTTGAAGATTTTAATGGCATACCTGGGAAAAGTGTCTTCAGCCCTTCCAAAAACATCACTAAGCATCTGTCTGCCGAGATCAGCCAGCCAATCATTTTTGAATATTCTAAaggacaaattactgacattcgCACAGCACCTGGAGTCTCAAACACAGTTGTGAATATTGTGAGGGGGATCCTTGGATTTTTACAAGTCACGGTCAAAACCACACAAAGTTTTTACGAACTAATTGAGTTGGGAATTCATGGTTTGTGTCAGAGCAGTTACACTGTTGATGAAGACTCTAACGCAAAAGAGTTGATAGTAACACGAATTGTTGATATCACCAACTGTCAACAGCCAGCATCTTTGTACAGAGGTATGGCTCTTGCACCTGAAGACAAACTTAGCAAACAGAGAGGCGAAAGCGTTGTTTCCACTGTGAAACACACCTACACAGTGAAGTCCACAGCAGACGGTGGTCAGATTACTAAAGCATTTGCTCAGGAGCGCCAATATTTCTCTCCGTTCAATGTAAAGGGAGGAAACTTCCGAATGTTGGCATTGCGGGACATTGAACTTCTTAAAGTTTCAGACACAACTGACAAAGTAGTGACTGGACAGGTGCAGAGCAGAGGCAACCTGATGTATAAGACAAATAAGGACCTCAAACCAATACCTGTTGTGATGCTTAACCTGAACGACCCAGTGCCCAAGATTTTAGATTTAATCAAGCGCCTCGCACAGGCTAATATATATCATGTGGACAGTGAAACCAGCACAGAAATTCTGGACCTAATTCAGTTGATGCGGGTAACAACACTTGATAATCTAGAGCATTTATGGAAGCAGGTCTCAGGAAATGATGAGCACAGgcGGTGGTTCTTGGACTTGGTTGTGGAGGTAACAGATGAAAGAATTCTCAAATTCCTTGAGGCCAGATACAAAGCAGGAGACATCACAGCGAATGAGGCAGGACAAGCACTGGTAGTGGCATTTAACCACTTGTCCGCTGAGCCTGTGTCGGTGGCATTAGCTCAGGAGTTCCTGACCATTCCTTTCAGTAAATCCCATCCTCTCCTGTGGAACACTGTAGTTTTGGCATATGGATCTCTTGTACACAGATACTGTGTGTATACTGACCCCTGCCCTATCACTGTGGTACAGCCATTGCTGAATATGGCTGCAAGTAGCCTAAGTAAAAACTCTGAGGATGAAATGGTCCTTGCGCTGAAGTCCTTGGGAAACGCAGCTCATCTTTCCAGCTTCAAGACTCTCCTCAAGTTCCTTCCTGGATACTCCAATGGAGCTGAAAAACTTTCCACCAGAGTGCAGGGAGCTGCAGTCCAAGCATTTAGGCTGCTTGCAAGCAGAGCCTCCCACAGTGTACAGGATATTGTCTTAAACCTCTTCGTACAGAAACATTTACCAGCTGAAATCCGCATGCTGGCCTGCATAGTTCTTCTAGAGACCAAGCCGTCCACAGCTCTGATTTCAGTAGTAAGTGAGGTCCTTCTAGAAGAGGCTGATCTGCAGGTTGCCAGTTTCTCCTACTCTCTGCTCAAAGGCTTTGCCAAGTCCCGTACCCCTGATAATCAACATCTATCTATTGCCTGTAATATTGCCATGAAGATTCTAACCCGTAAACTTGGCCACTTGAGTTACCGCTACAGCAAGAACCTGCACTTTGACTGGTTCCATGATGACTTTTTATTTGGGACATCTGCTGATGTTTATATGCTTCAGAATGAAAGTCCCATCCCCACAAAACTTATGCTTAAGGGAAAATTTCATTTCATTGGGAGAATACTGCAATTTCTTGAGTTTGGTATCCGTGCAGATGGACTCAAAGATCTGTTTGCTGGAAAAATCCCAGAACTCACGAAAGATTTAGGAATCAGCGATTTGGCTTCCATATTGAAAATTCTCTCTAACTGGCAGAGCCTACCAAAAGACAAGCCTCTTTTGACAGCTTATGCAAGAGTTTTTGGACAGGAAGCCTTTTTAATGGATGTAAGCAGAGACTCAGTTCAAAGCATCATAAAGTCTTTCAGTCCTTCTGCAGGAAAGGAGAGTAAAGTTTGGGAAAGGATTCAAGATGTTCAGAAAGGGACTTCATGGCACTGGACTAAGCCGCATCTTGTGTATGAGGCTCGGTTCATACAGCCGACATGTCTGGGTCTCCCAGTTGAAATCAGCAAATATTATTCCGTAGTAAATGCTGTTACAATGAAAGCAAAAGCTGAAATAAATCCTCCTCCAAAGGAACATCTGGGTGAACTGCTAAGCTCAGACATTTCCATGCAGACAGATGGCTTTATCGGCGTGACAAAGGATCATTTTCTCTTCCATGGAATCAACACTGATCTTTTTCAGTGTGGAACTGAGCTGAAAAGTAAGGTTTCAATGGGCCTGCCGTGGGCATTTGACCTGAAAATAAATCCGAAAGAGCAAACGTATGAAATGAACTTGACTCCAAGCAAATCGGTCACCGAATTATTTTCAGTCAGTTCTAATGTGTATGCTGTTTTGAGAAACATTGAAGACCCAACCTCATCTAAAATAACACCCATGATGCCTGAGACAGGGGAGTCCTGGCAGGGTGTGCCTCTGAGAATGTTACCCCCTTTAAGGGATGAACAGACCAAAAAATCTGGAATGAAATTCAGGCAATGTGCTGAAGCCAAAATTTATGGAACTGCACTCTGCATTGAGGCAGAAGCCAAACGTGCACACTATCTTCACGAATATCCTCTGTATTACTTACTGGGTGATACTCACTTTTCATACAGTTTAGAACCAGCAAAGGATGCAAAACCCATTGAAAAAATTCAGATTCAGGTCTCTGCCAGCAGACAACATCCTTCAGTAATGAGTGGAATGGTGAATCTCAACCAAAGGGTATTTAAGGAGACAAGAGATGAGAACACCTCCTGTGAGGAACGCAAAACATCCAGTTCACTCCCAGTAACTCAGGATCTAGATGTCACTCCAGACCCGGTAGTCACAGTAAAAGCACTTAGTTTAAGTCCACAAGCAAAACCCCTTGGCTATGAAGGCGTAGCCTTTTATCTGCCAACTGCCCAAAAAGACGACATTGAAATGATCGTCTCTGAAGTTGGTGAAGAAGCAAACTGGAAAATGTGTGCCAATGCACATTTTGATAAGACTCATACATCAGCAAAGGCTCATCTCAGATGGGGTGCAGAGTGTCAAACATATGATGTTTCTATGAGAGTGTCCGCAGCGTGCCAACCAGAGTCCAAACCATCTATAAGCACAAAGATTAACTGGGGGACTCTGCCCTCAGTATTCACAACAGTTGGTCAAATAGTTCAAGAGTATGTACCTGGCGTGTCTTACATTATGGGTTTCTACCAGAAAAAGGAGGAAAACCCAGAACGGCAGGCATCTGTCATCGTTGTAGCATCCTCACCAGAGACCTTTGACCTGAAAGTGAAAATTCCAGAGCGAACTATCTACAAAAAGAAAATTCCCTCACCAATTGAACTTTTGGGGATCGAAGCTGCAAATCTCACCATGTCAACTTAACAGGTTAATTTATGAACTATGGGTTACAAAACTGGTTGTTCCTGTGTACCGACATAAATTCAATGTTACTCTTTGTCCCTTACAGGCTGATGTCATAGAACATTTCTGGAGGACTAAACTGACAACGTGAAATGAATGAATCATCAAATGTTGTGAATTGTTTGTACATTCCGGACATTTGATTAATTATTGATTTGGATACTAAATATGTGCTTAAAAGCAACATATGTTAAGTACTCCAACAAATAAAACATGCATGAAGAGATCATCTGTgggattaatttattttatgatagTTCATCATAATCCAGCCTAGATAGATTTACTTGTAGAGTCTCAACAACATTAATCTTTATGTTCAGAATGTTAATGAGATGGCACAGACTAGCAACACCTGAAAAACAAATTATGAGTGTACAGCCTAGCTTCATGGGCTGCTTCCAGTGGAACCAATTGGAAATAAATATCTTTAGTTTTGT
>TCONS_00007486
AATTCAGATTCAGGTCTCTGCCAGCAGACAACATCCTTCAGTAATGAGTGGAATGGTGAATCTCAACCAAAGGGTATTTAAGGAGACAAGAGATGAGAACACCTCCTGTGAGGAACGCAAAACATCCAGTTCACTCCCAGTAACTCAGGATCTAGATGTCACTCCAGACCCGGTAGTCACAGTAAAAGCACTTAGTTTAAGTCCACAAGCAAAACCCCTTGGCTATGAAGGCGTAGCCTTTTATCTGCCAACTGCCCAAAAAGACGACATTGAAATGATCGTCTCTGAAGTTGGTGAAGAAGCAAACTGGAAAATGTGTGCCAATGCACATTTTGATAAGACTCATACATCAGCAAAGgtaaatgttttaaagttttcTTATTCTCATAAATTTCCATATTGCCccattgatttttgttttattagtctCTACATATTAAACTTTAGTGTGAGCCAAAGTCTAGGTGGTAGGCCGGATTGAACGTTAGGC

Function

symbol description
vtg3 Predicted to enable lipid transporter activity. Acts upstream of or within cellular response to estrogen stimulus. Is expressed in several structures, including axis; digestive system; hatching gland; ovary; and sensory system.

GO:

id name namespace
GO:0032355 response to estradiol biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0006869 lipid transport biological_process
GO:0005319 lipid transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-991019-2 Predicted to enable lipid transporter activity. Acts upstream of or within cellular response to estrogen stimulus. Is expressed in several structures, including axis; digestive system; hatching gland; ovary; and sensory system.

Ensembl:

ensembl_id ENSDARG00000016448

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007484 False 4182 mRNA 0.43 28 7359496 7380688
TCONS_00007485 False 4246 mRNA 0.43 27 7359500 7380674
TCONS_00007486 True 490 lncRNA 0.41 3 7362424 7365383

Neighbor

gene id symbol gene type direction distance location
XLOC_003909 si:dkey-197i20.6 coding downstream 3501 7350926 ~ 7355995 (-)
XLOC_003908 NA coding downstream 9999 7345800 ~ 7349497 (-)
XLOC_003907 apc2 coding downstream 39285 7281240 ~ 7320211 (-)
XLOC_003906 zgc:113223 coding downstream 97779 7253077 ~ 7261717 (-)
XLOC_003905 smim7 coding downstream 202803 7151579 ~ 7156693 (-)
XLOC_003911 adgrl4 coding upstream 2489 7383177 ~ 7411436 (-)
XLOC_003912 NA coding upstream 393144 7773832 ~ 7796332 (-)
XLOC_003913 ttll7 coding upstream 600555 7981243 ~ 8126263 (-)
XLOC_003914 uox coding upstream 780206 8160894 ~ 8168011 (-)
XLOC_003915 pimr203 coding upstream 821154 8201842 ~ 8208464 (-)
XLOC_003938 BX324177.10 misc upstream 3958116 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 3986906 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 3989767 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 4000216 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 4003145 11383833 ~ 11384130 (-)
XLOC_003904 CR925817.2 non-coding downstream 243133 7116247 ~ 7116363 (-)
XLOC_003895 NA non-coding downstream 559558 6792546 ~ 6799938 (-)
XLOC_003894 BX936438.1 non-coding downstream 577420 6780708 ~ 6782076 (-)
XLOC_003893 NA non-coding downstream 903196 6455034 ~ 6456300 (-)
XLOC_003920 CR847563.2 non-coding upstream 1096273 8476961 ~ 8515750 (-)
XLOC_003922 NA non-coding upstream 1602963 8983651 ~ 9523184 (-)
XLOC_003923 CR788237.2 non-coding upstream 1905135 9285823 ~ 9286476 (-)
XLOC_003924 CR788237.1 non-coding upstream 1911593 9292281 ~ 9293411 (-)

Expression


Co-expression Network