XLOC_003911 (adgrl4)


Basic Information

Item Value
gene id XLOC_003911
gene name adgrl4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 7383177 ~ 7411436 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007487
GATTTGCACAAACTCATGGATCATATTTCACAAGGGAAATGATTTACACTATTGTGTTTCACTAATGCTTAAGTGGTTTGATTTTATACATGCAGTAGCGTTTTGTGTGTGAAGATGAGTTTTTGTGAGTTGATTGAGCCGGACAGGAAGGGTCAGGATTAGAGAAACAGGAAGCTGACATAAAGGAAGTATCGTGCGTCACACAGATATTCGCTTGCTGCTTAAAGACATTCCAGCTTCACCTCTAAAATGGAGTTTTTACACAGTTCTCCAATGAAACTCCTGCTTTTCGCTGCTTGGTTTTCAAGTTTGCTGGATCCATGCAGATTTCTTGACATTTGCCAGTCTTGTCACCCAAATGCCGACTGCGATGACATCTGTAAATGCAGAACAGGGTACACTGGTAATGGAATCAGCGATTGTAGAGATGACAATGAATGTGAGACTGTACCTGAAATTTGTGGCTTACATGCCAACTGCACCAACTATGTTGGCGGTTACTACTGTAACTGTTTATCTGGATTCATTTCGAATGGAACAGAGCAATTTCAAACTAATGATGGGACCTCCTGCAACGATATAAATGAGTGTGAGGAGGACAGAAAATGTGGACCCAATTCAAAATGCCACAACAATATTGGCTCATTCATCTGCTCATGTTTGAGAGGTTATACATCGCCAGCAGGGCCCTGGTTCATGCCCAACCATGGGACAGACTGCATAGAAAACTCAAAGATACACTGCCATCAGGACCACAAATGTACTAAAGAGACAGTTAACAGCACACTGGAAAGAATGACCAATCTGTCCATTTCAGAGCGTCTGAAAGAGATAAGATATCAAACATCAGCTGCACTCTCTCCTGTTCTTCTCATATCATACATTGAGGCCATGGTCAGCAGTAAATTAAATTCTGGAGATGTGTCTAAAGATTCAAAGGAACACGTCAATGAAACCATCACGAATTTGGTTTTTAGTGTAAATAACTTAGTCGAGAAGGATGAAAAGGTGGAATGGAAGAAGATCAATGAAGATTTGAGGATGTATTATGTCACCAAACTCCTTCACACAGCAGAGAAGGAAACACTGGCCCTGTCTGCTGGATACACACATGCTACTCAGATGCAGGTGCATGCCGGTGATGTAGAAATGAAATTATACACATTTGAACCCCGCCAAGCACAGAAGCATCCACTGTCAGCCAACATCCAAGGAAACTCCATTTCACTAAGCACCAAGAAAGCAAGACATGCAAACAACAATGGCAGTACATCCGTTGTATTCCTCATCTATCACAGCATCGGGGATCTTTTAAAGCCTGCCGATGACCCTGGAGTGGCCGATTACTCTCGCTATGCAGCAGCGGGTGAAATCACAGTTAATTCACCTGTAATAGCAGCAGCCATCAGTAACCAGAAGACGCTTCCACTGAACGATGTGACCTtcactctgaaacacacacaggaGATAGATCCAGCCCGTGATGAGACTAAGTGTGCATTCTGGGAATATTCACCAAGCATGATGGGACACTGGAGTTTAGATGGCTGTATACGCACTCGTGTGAACACCACACACACTTCATGTTCTTGTAATCACCTGACACACTTCGCTATTCTCATGTCCTCCGCTCGCGCTAATctgCTTGCACACTATAATGTTCTGACGAGGATAACACAGCTGGGAATGGTGATCTCTCTCATCTGCCTGTCCATGTGTATTTTCACCTTCTGGTTCTTCCGAGACATCCAGAACACCAGAACCACGATCCACAAGAACCTGTGCTGCAGCCTCTTCATGGCCCAGTTCATCTTTCTCATTGGGATTAACAAAAGTGCACACAAGTGGTTCTGTTCTCTGATCGCTGGCCTGCTGCACTACTTCTTCTTGGCTGCATTTGCTTGGATGTGCATAGAAGGGATCCATTTATATCTCATTGTTGTTGGCGTCATCTATAACAAAGGTTTCCTGCACCGGAACTTCTACGCATTTGGTTATGGGAGCCCTGCTGTGGTTGTCGCAATATCTGCAACTCTTGGTTATAAATATTATGGGACCAGTTCTGTGTGTTGGCTAAGCACTGAAAATAACTTCATCTGGAGTTTCATAGGCCCAGCCATTCTGATCATCCTGGTTAATCTGCTGGCATTTGCTGTGATCATCTATAAGGTTTATCGTCACACTGCAGTAAAGAAACCTGAAATCAGTCACTATGAAAATATCAGGTCTTGTGCAAGAGGAGCCATTGCTCTCCTGTTTGTTCTTGGAGTAACCTGGGCATTTGGTGTGATGTACATCTTATATGAGACCACCCTGACTGCGTATCTCTTCACCTTCGCCAATGTGTTCCAAGGGATGTTCATTTTCATATTCCTTTGCGTTCTGTCCAGAAGGATTCAAGAGGAGTACTACAGATTATTCAAGAACATGCCATGTTGTTTTGAGTGTCTGCGATGAACAGGTGAACTACAACGCAATGCTTTCAGATCaaggcattaaaaaaaaacgtaCTTGGCATGAAtgttacaatatatttatttttgaaagaaatgtattaaaaaactaAGTGATACTGCATGCTATGAGTTTCATAACCTGCTGGAGTCGGTAGCTTCAAGACAATAACAATATTTTCTATCTGATTACTGGTTAAAAGgattgtatatatactgtattgcaTTCTAATAAAATCATTGTCTACATTTGAAGTATTAGTTTTGACGTGACGAAGTAAACAAAACTGAAACTAT
>TCONS_00007488
GAAAAGCCGCACCCTCCTCCATCTTGCTGTCACGGGTCACACTGGGATCAAAGTTACACTCAAACCTAGAACCCTCTTGGTTTTCAAGTTTGCTGGATCCATGCAGATTTCTTGACATTTGCCAGTCTTGTCACCCAAATGCCGACTGCGATGACATCTGTAAATGCAGAACAGGGTACACTGGTAATGGAATCAGCGATTGTAGAGATGACAATGAATGTGAGACTGTACCTGAAATTTGTGGCTTACATGCCAACTGCACCAACTATGTTGGCGGTTACTACTGTAACTGTTTATCTGGATTCATTTCGAATGGAACAGAGCAATTTCAAACTAATGATGGGACCTCCTGCAACGATATAAATGAGTGTGAGGAGGACAGAAAATGTGGACCCAATTCAAAATGCCACAACAATATTGGCTCATTCATCTGCTCATGTTTGAGAGGTTATACATCGCCAGCAGGGCCCTG

Function

symbol description
adgrl4 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cardiovascular system; eye; liver; pleuroperitoneal region; and ventral mesoderm. Orthologous to human ADGRL4 (adhesion G protein-coupled receptor L4).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-040426-2689 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cardiovascular system; eye; liver; pleuroperitoneal region; and ventral mesoderm. Orthologous to human ADGRL4 (adhesion G protein-coupled receptor L4).

Ensembl:

ensembl_id ENSDARG00000013653

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007487 False 2750 mRNA 0.42 16 7383177 7410537
TCONS_00007488 True 472 mRNA 0.44 4 7404845 7411436

Neighbor

gene id symbol gene type direction distance location
XLOC_003910 vtg3 coding downstream 2489 7359496 ~ 7380688 (-)
XLOC_003909 si:dkey-197i20.6 coding downstream 27182 7350926 ~ 7355995 (-)
XLOC_003908 NA coding downstream 33680 7345800 ~ 7349497 (-)
XLOC_003907 apc2 coding downstream 62966 7281240 ~ 7320211 (-)
XLOC_003906 zgc:113223 coding downstream 121460 7253077 ~ 7261717 (-)
XLOC_003912 NA coding upstream 362396 7773832 ~ 7796332 (-)
XLOC_003913 ttll7 coding upstream 569807 7981243 ~ 8126263 (-)
XLOC_003914 uox coding upstream 749458 8160894 ~ 8168011 (-)
XLOC_003915 pimr203 coding upstream 790406 8201842 ~ 8208464 (-)
XLOC_003916 pimr204 coding upstream 810399 8221835 ~ 8271374 (-)
XLOC_003938 BX324177.10 misc upstream 3927368 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 3956158 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 3959019 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 3969468 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 3972397 11383833 ~ 11384130 (-)
XLOC_003904 CR925817.2 non-coding downstream 266814 7116247 ~ 7116363 (-)
XLOC_003895 NA non-coding downstream 583239 6792546 ~ 6799938 (-)
XLOC_003894 BX936438.1 non-coding downstream 601101 6780708 ~ 6782076 (-)
XLOC_003893 NA non-coding downstream 926877 6455034 ~ 6456300 (-)
XLOC_003920 CR847563.2 non-coding upstream 1065525 8476961 ~ 8515750 (-)
XLOC_003922 NA non-coding upstream 1572215 8983651 ~ 9523184 (-)
XLOC_003923 CR788237.2 non-coding upstream 1874387 9285823 ~ 9286476 (-)
XLOC_003924 CR788237.1 non-coding upstream 1880845 9292281 ~ 9293411 (-)

Expression


Co-expression Network