RNA id: TCONS_00007549


Basic Information

Item Value
RNA id TCONS_00007549
length 151
RNA type processed_transcript
GC content 0.49
exon number 2
gene id XLOC_003936
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11319141 ~ 11331146 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgcgGCTTACGTCATATGTGGGCGACGGAAGTGTGCGCACGCTATCACGACCTTCCTGACAAGAAGGAAAGCAAATAATCAGTTCATCTCATCTGTATCTGGAGAAAGCGCACTTCCACCAAATCTCAGACTGCCACCAAATCTCATTGGA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-050522-388 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL4 (mitochondrial ribosomal protein L4).

Ensembl:

ensembl_id ENSDART00000173019

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007547 lncRNA downstream 5105 11319190 ~ 11325620 (-) False XLOC_003936
TCONS_00007541 lncRNA downstream 470619 10859024 ~ 10860106 (-) True XLOC_003933
TCONS_00008768 lncRNA downstream 1002198 10305130 ~ 10328527 (-) True XLOC_003927
TCONS_00008455 lncRNA downstream 1807541 9521226 ~ 9523184 (-) True XLOC_003922
TCONS_00008766 lncRNA downstream 1808108 9510569 ~ 9522617 (-) False XLOC_003922
TCONS_00008456 lncRNA upstream 12190 11343280 ~ 11343574 (-) True XLOC_003939
TCONS_00008457 lncRNA upstream 22884 11353974 ~ 11354268 (-) True XLOC_003940
TCONS_00008458 lncRNA upstream 25803 11356893 ~ 11357187 (-) True XLOC_003941
TCONS_00008459 lncRNA upstream 73506 11404596 ~ 11404890 (-) True XLOC_003946
TCONS_00007564 lncRNA upstream 120570 11451660 ~ 11451935 (-) True XLOC_003955
TCONS_00007544 mRNA downstream 29368 11275540 ~ 11301357 (-) True XLOC_003935
TCONS_00007543 mRNA downstream 29442 11274940 ~ 11301283 (-) False XLOC_003935
TCONS_00007542 mRNA downstream 63843 11263451 ~ 11266882 (-) True XLOC_003934
TCONS_00007540 mRNA downstream 479789 10832560 ~ 10850936 (-) True XLOC_003932
TCONS_00007539 mRNA downstream 502186 10812949 ~ 10828539 (-) True XLOC_003931
TCONS_00007550 mRNA upstream 1562 11332652 ~ 11336986 (-) True XLOC_003937
TCONS_00007565 mRNA upstream 123455 11454545 ~ 11458208 (-) True XLOC_003956
TCONS_00007566 mRNA upstream 137476 11468566 ~ 11471857 (-) True XLOC_003957
TCONS_00007567 mRNA upstream 184688 11515778 ~ 11518469 (-) True XLOC_003958
TCONS_00007568 mRNA upstream 234906 11565996 ~ 11575070 (-) False XLOC_003959
TCONS_00007494 other downstream 3204530 8111369 ~ 8126195 (-) True XLOC_003913
TCONS_00007477 other downstream 4214362 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007463 other downstream 4382707 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007456 other downstream 4548649 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007441 other downstream 5124136 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007551 other upstream 7714 11338804 ~ 11339100 (-) True XLOC_003938
TCONS_00007552 other upstream 36504 11367594 ~ 11367890 (-) True XLOC_003942
TCONS_00007553 other upstream 39365 11370455 ~ 11370653 (-) True XLOC_003943
TCONS_00007554 other upstream 49814 11380904 ~ 11381204 (-) True XLOC_003944
TCONS_00007555 other upstream 52743 11383833 ~ 11384130 (-) True XLOC_003945