XLOC_003932 (psmd14)


Basic Information

Item Value
gene id XLOC_003932
gene name psmd14
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 10832560 ~ 10850936 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007540
TCCGTCCTGTATATCCCTGTTGTGGTGCGTTTCACGTTGGTAATTCTGGCTGATTCATTGTAGACGAGCTGAAACTCAGCTGCCACTCTcacattttctctttcttattgAACAACAGATATAAGGAATGGACCGGCTCTTGAGGCTTGGAGGGGGAATGCCGGGACTCAGCCAGGGTCCTCCCACAGATGCTCCCGCTGTGGACACGGCTGAACAGGTGTACATCTCCTCCCTCGCTCTGCTCAAGATGCTGAAACATGGCCGTGCTGGTGTGCCCATGGAAGTCATGGGTCTGATGCTGGGAGAGTTTGTGGACGATTACACAGTACGCGTGATTGATGTGTTTGCCATGCCGCAGTCAGGAACGGGTGTGAGCGTTGAGGCCGTGGACCCCGTTTTTCAAGCTAAGATGTTGGACATGTTAAAGCAGACGGGACGgcCTGAGATGGTGGTGGGCTGGTACCACAGTCACCCTGGTTTCGGCTGCTGGTTGTCAGGTGTGGACATTAACACACAGCAGAGTTTCGAGGCGCTGTCAGAACGTGCTGTTGCCGTTGTGGTCGATCCCATCCAGAGCGTCAAGGGAAAGGTTGTTATCGATGCCTTCAGGCTAATAAATGCCAATATGATGGTGCTGGGTCATGAACCACGTCAAACCACTTCTAACTTGGGACATCTCAACAAACCATCAATTCAGGCTTTGATTCATGGACTCAACAGACATTATTACTCCATTACCATCAACTACAGGAAGAATGAATTGGAACAGAAGATGTTACTGAACCTCCACAAGAAGAGCTGGATGGAGGGTCTGACTCTGCAGGATTACAGTGAACACTGCAAACTCAACGAGACCATCGTCAAGGAGATGCTCGAACTGGCCAAGAACTACAATAAGgctGTAGAGGAAGAAGACAAGATGACTCCTGAGCAGCTTGCCATTAAGAACGTTGGAAAACAGGATCCCAAACGGCATTTGGAAGAGCATGTGGATGTTCTTATGACATCCAATATTGTGCAGTGCCTCGCAGCAATGTTGGACACTGTTGTGTTCCATTGATTTCCCCCATCCATCTCTGTTTGTGCATACATGTTCATATTCTACAACCGTTTTGTCTTTTtaagaaataaacacaaaattcCAGTCACA

Function

symbol description
psmd14 Predicted to enable metallopeptidase activity; proteasome binding activity; and thiol-dependent deubiquitinase. Acts upstream of or within response to yeast. Predicted to be part of proteasome regulatory particle, lid subcomplex. Orthologous to human PSMD14 (proteasome 26S subunit, non-ATPase 14).

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0001878 response to yeast biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0008541 proteasome regulatory particle, lid subcomplex cellular_component
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0070628 proteasome binding molecular_function
GO:0061578 Lys63-specific deubiquitinase activity molecular_function

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko01002 Peptidases and inhibitors
ko04121 Ubiquitin system
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-070410-56 Predicted to enable metallopeptidase activity; proteasome binding activity; and thiol-dependent deubiquitinase. Acts upstream of or within response to yeast. Predicted to be part of proteasome regulatory particle, lid subcomplex. Orthologous to human PSMD14 (proteasome 26S subunit, non-ATPase 14).

Ensembl:

ensembl_id ENSDARG00000063100

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007540 True 1150 mRNA 0.48 11 10832560 10850936

Neighbor

gene id symbol gene type direction distance location
XLOC_003931 tbr1a coding downstream 4021 10812949 ~ 10828539 (-)
XLOC_003930 slc4a10a coding downstream 34496 10669461 ~ 10798064 (-)
XLOC_003929 mcf2l2 coding downstream 169438 10467299 ~ 10663122 (-)
XLOC_003928 ect2 coding downstream 376007 10388303 ~ 10456553 (-)
XLOC_003927 NA coding downstream 504033 10305130 ~ 10328527 (-)
XLOC_003933 CR678435.1 coding upstream 8088 10859024 ~ 10860106 (-)
XLOC_003934 lgsn coding upstream 412515 11263451 ~ 11266882 (-)
XLOC_003935 col9a1a coding upstream 424004 11274940 ~ 11301357 (-)
XLOC_003936 mrpl4 coding upstream 468205 11319141 ~ 11331146 (-)
XLOC_003937 C11H6orf120 coding upstream 481716 11332652 ~ 11336986 (-)
XLOC_003938 BX324177.10 misc upstream 487868 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 516658 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 519519 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 529968 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 532897 11383833 ~ 11384130 (-)
XLOC_003922 NA non-coding downstream 1309376 8983651 ~ 9523184 (-)
XLOC_003939 NA non-coding upstream 492344 11343280 ~ 11343574 (-)
XLOC_003940 NA non-coding upstream 503038 11353974 ~ 11354268 (-)
XLOC_003941 NA non-coding upstream 505957 11356893 ~ 11357187 (-)
XLOC_003946 NA non-coding upstream 553660 11404596 ~ 11404890 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G241317 NA non-coding NC_048567.1 CM023221.2 27552053 ~ 27552333 (-)