XLOC_003934 (lgsn)


Basic Information

Item Value
gene id XLOC_003934
gene name lgsn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11263451 ~ 11266882 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007542
GGGACTGAACAGACTGGATGGTTCATGCATTTGGTTGGGGAGAAAGGGAGCAGATTGGtttgtttcagtctctgttagtCAGTTGTGTGAGTCACTTTGATTAGGCCAGATGGTTGTGACTTTTCAGACATTCACCTTAAAAAACTAAGCATCATGCAAGAATCAGAGGAATCCAAAGATACGGAGACAGTTCCAGACCAGGTGGATGGAGGAAGTATGAGTGCAAGAAAGAAGGATGCAGATCCAAGAGAGAAGCGTCTTTCCTCCTCTGAATGGGACAGGAAAGGAACACCTGTAGCCATATCGCAATCAAAAGTACCAATTTCTGGCCCCACAAATGATCCCATCCTCATTTCCATTGGCCCTCCACATCATTTCCCTTCTGTTTCCAGTGAGTCCCAGTACCAGGGTTTCTCTCGAGAGGAAGATTACATCAACAGGCATGGATGGAGAAGGGAGAATGTGCAGTATTACCCGTCAAATACTGAGGGTGGCGTTCCCAAACAAACCATGGATGAACTGAAAAGTGTGTTGCGTGAGAGTTCCCTACTGAGTGCAAAAGGACAAGATGAAGGACGAAGCTACCCTCCGGGTCAAAGAGTGGACTGTAAGCCAGACCAGGAACCATCCAGGACTTTCAGCACCTTCAAGCCCTATTCAGAAGCTAGGAGGGCATCCAGACAAAGAGACAGAAACTGGGATTCTAGTGGGTCTTCGAGGACTGATGGACCTCCAAATAGGTCCTCTGGTATGAATTCCCCAACTTTTCAGGCATCCGATTGGGGTGAGGTTGGCACATCCCAGTCAGACAAGGAGCGCTCACAGGCACACTCTTTCGCCTCCCAAAGCTTCATTTCTGATGTCGAGCGCATAAAACAGCAAATTGCCCGGGAAAACTTAAGCTTTGTTCGCTTTGAGGCCACTGATCTTCATGGAGTGTCCCGATCCAAGACAGTTCCAGCTCGATTCTTTCATGAAAAAGCTGTATATGGCATCCCTATGCCAAGGAGCTACCTAGAGTTAACCCTAAGCCCCCAAATCAATGAAGTTGACCATGCAAGTGCAGTAAACTTTAGTAGTGACGTCCTGCTGGTCCCAGATCTCTCCACATTCCAAATTCTTCCCTGGGCGGATCAGACCGCTCGTCTCATCTGTGACCCCTGCACAATCACAGGAGTGCCTCTACGAACATCGCCCCGTCTCATAGCCAAGATGATGCTCGGACAGCTCCAGAGCATGGGATTCTCTCTGCACTCATCGTTTACCTACGAGTGCTGTATCTTCGGGAGCCCTGAACATGTGGGACCCAAAGCAGTGTTCTTCCCTGCAACCACACTGTTAAGCAACAACGATCAACCCTTCCTCCAGCAGTTAGTCAAAGGCATGTACAACATGGGAGTGGATGTTGAGAGCTTCTCTTCAGCAAATGGACCAGGACAGATGGAAATTTGCTTCAAGCCCAGGTTTGGAATGGATGCCGCTGACAACGCCTATACCTTTCGCACCGGAATCAAAGAGATGGCCAGGAAGTATGACTACATTGCCACCTTTTTCACCTACGAGAACATCCAGAATTCAGGTTTACTCTCCCATAGCCTCTGGGATGCAAGTGGCAGAAGAAGCCTTTTTCATTCAGGCAATGGGGAACTTTCGGAGATTGGCAGAAAATGGCTCTCAGGTCTTCTCCATCATTCTGCCGCTTTGAGCTGCCTCTTGGCTCCAGGAATCAGTTGTCGAACCCAGATTTCCAAAGGCAAGAAAGATTCCAAGAACCATGTTTATGCCACATGTGGCTGCAATGACAACAGCTGCGACTTTAATGTGAAGATTCATGGTGGACGGGAGACACACATTGATAACAAGCTGGCTTCAGCAATGGCAAACCCTTACATTGTGTTGGCAGCCACTATAGCAGCAGGACTGGACGGAATCAAGCGTAATCTCAATGCAGAACAGGTACTAAGCAGAGCTCCAAATCAGCAGAAACAGTTTGTCATCCCTGTTAAACTGGATGATGCTTTATTAGCTCTGGCAGAGGACAGTGTGATTTGTGGTGCACTGGGAGAGCCTTTCGTGCAGTATTTTATCGCCATGAAGCAAATAGAGATGGAGAGCCAAGAGGATGCTGACAGAAATGAGGGACTTGATTATTTCATTTAACTTGTGACTTTGGCATTTTTTGTGTATTCAAAACCCAGAAAACTAATTTGATGACTATTTGATTTGTTACTGAAGACAAATAATCCCTCTTTTGCAAGATTTGTAATTAAAATCATACAACTGACTGGTATCTGCTA

Function

symbol description
lgsn Predicted to enable glutamate-ammonia ligase activity. Acts upstream of or within cell differentiation and lens morphogenesis in camera-type eye. Located in actin filament. Is expressed in lens. Orthologous to human LGSN (lengsin, lens protein with glutamine synthetase domain).

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0002089 lens morphogenesis in camera-type eye biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0006542 glutamine biosynthetic process biological_process
GO:0005884 actin filament cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004356 glutamate-ammonia ligase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060312-26 Predicted to enable glutamate-ammonia ligase activity. Acts upstream of or within cell differentiation and lens morphogenesis in camera-type eye. Located in actin filament. Is expressed in lens. Orthologous to human LGSN (lengsin, lens protein with glutamine synthetase domain).

Ensembl:

ensembl_id ENSDARG00000007715

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007542 True 2297 mRNA 0.47 4 11263451 11266882

Neighbor

gene id symbol gene type direction distance location
XLOC_003933 CR678435.1 coding downstream 403345 10859024 ~ 10860106 (-)
XLOC_003932 psmd14 coding downstream 412515 10832560 ~ 10850936 (-)
XLOC_003931 tbr1a coding downstream 434912 10812949 ~ 10828539 (-)
XLOC_003930 slc4a10a coding downstream 465387 10669461 ~ 10798064 (-)
XLOC_003929 mcf2l2 coding downstream 600329 10467299 ~ 10663122 (-)
XLOC_003935 col9a1a coding upstream 8058 11274940 ~ 11301357 (-)
XLOC_003936 mrpl4 coding upstream 52259 11319141 ~ 11331146 (-)
XLOC_003937 C11H6orf120 coding upstream 65770 11332652 ~ 11336986 (-)
XLOC_003939 NA coding upstream 76398 11343280 ~ 11343574 (-)
XLOC_003940 NA coding upstream 87092 11353974 ~ 11354268 (-)
XLOC_003938 BX324177.10 misc upstream 71922 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 100712 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 103573 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 114022 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 116951 11383833 ~ 11384130 (-)
XLOC_003927 NA non-coding downstream 934924 10305130 ~ 10328527 (-)
XLOC_003922 NA non-coding downstream 1740267 8983651 ~ 9523184 (-)
XLOC_003941 NA non-coding upstream 90011 11356893 ~ 11357187 (-)
XLOC_003946 NA non-coding upstream 137714 11404596 ~ 11404890 (-)
XLOC_003955 NA non-coding upstream 184778 11451660 ~ 11451935 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000056_01864934_01867946 LGSN coding CI01000056 null 1864885 ~ 1868212 (-)