CI01000056_01864934_01867946 (LGSN)


Basic Information

Item Value
gene id CI01000056_01864934_01867946
gene name LGSN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000056
NCBI id null
chromosome length 2086016
location 1864885 ~ 1868212 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000056_01864934_01867946.mRNA
ACATTATAATCAATGGCATTTTGTTAAATAACCTTTTAGTCAAACAATTGCATCTTTCTAGAGATTTGATGAATGATGTGTTGTGGACTGTTGAAAACAGCTGATGTGCAGAAGCTCACAATAGATGAGTGGGACTGAACAGACTGGACGGTTCAGGCATTTGGTTGGGGAGAAAGGGAGCGGATTGGGTTGTTTCAGTCTCTGTTAGTCAGTTGTGTGAGGCACTTCAATTGGGAGATGGTTATAACTTTCCAGACATTCACATAATGCAAGAATCAGATGAAGACATGGAGAAAATTCCAGACCAAGTGGATGGAGGAAGTATGAGCGCAGGAAAGAAGGGTGCAGATCAAAGAGAGAAGCATCTATCCTCTTCTGACTGGGACAGAAAAGGGACACCTGTACCCATAGTGCCATCAAACGTACCAATTCCGGGCCCCACAAACGACCCCATCCTTATTTCCATTGGCCCTCCACATCGTTGCCCCTCTGTTTCCAGTGAGTCCCAGTACCAGGGTCTCGAGAGAGAGGATGACTACGCCAACAGGCATGCATGGAGAAGGGAGAATGTGCAATATTACCCGCCAACTAGTGAGGGTGGCGTCCCTAAACAAACAATGGATGAACTGAAAAGCGTGTTGCGTGAGAGCTCCCTACTGAGTGCAAAAGGGCAAGATGAAGGAAGGAGCTACCCTCCCGGTCAAAGAGTGGACTGTAAGCCAGACCAGGTGCCTTCTAAGAGTTTCAGCACCTTCAAGCCAATTTCAGAAGCTAGGAGAGCATCCAGACTAAGGGAAGGAAGCTCTAGCTTGGATTCAGGCGGGCCTTCAAGGACAGATGGACCTCCACGCAGGTCCTCTCGTGTGAATTCACCCACTGTTGAGACATCCCACTGGGGTGAAGCTGGCACATCACATTCAGACAAAGAGAGCTCACAGGCACAGTCTTTTGCATCTCAAAACTTCATTTCTGACGTTGAGCACATAAAACAGCAAATTGCCCGGGAAAACATAAGCTTTGTTCGCTTTGAGGCCACTGATCTTCATGGCGTATCCCGATCCAAGACCGTTCCGGCTCGATTCTTTCAAGAAAAAGCTGTATATGGCATCCCAATGCCGAGAAGCTACCTGGAGTTAACCCTAAGTCCCAAAGTCAATGAAGTTGATCATCCAAGTGCAGCCAACTTCAGCAGTGATGTCCTCCTGGTCCCGGATCTCTCCACATTTCAAATCCTCCCCTGGGCGGACCAGACCGCTCGCCTTATCTGCGACCCCTGCACAATCACTGGTATACCACTGCGAACATCACCCCGCCTCATAGCCAAGCAGATGCTCGGCCAACTCCAGAGCATGGGATTCTCTCTCCACTCATCTTTCACCTATGAGTGCTGTATCTTCGGGGCCCCTGAACGAGTGGGACCCAAAGCTGTGTTCTTCCCTGCCACCACACTGTTGAGCAACTACGATCTACCCTTCCTGCAGCAGCTAGTCAGGGGGATGTACTACATGGGAGTTGATGTTGAGAGCTTCTCATCTGCTAATGGACCAGGACAGATGGAGATTTGCTTCAAACCCAGGTTTGGAATCGATGCCGCCGACAGCGCTTTCACCTTCCGCACAGGAATCAAAGAGATGGCCAGGAAGTTTGACTATATCGCCACCTTTTACACAGATGACAACATCCACAATTCAGGATTACTCTCCCATAGCCTTTGGGATGCCAGTGGCAGAAGAAGCCTCTTCCACTCGGGCAATGGGGAAATTTCGGAGATCGGCAAGAAGTGGCTCTCAGGTCTTCTCCAGCACTCAGCTGCTCTGAGCTGCCTCTTGGCTCCAGGGATCGGCTGTCGAAACCAGCTTTCCAAAGGCAAGAAAGATTCCAAGAACTATCTTTACGCCACATGCGGCTGCAACGACAACAGCTGTGCCTTCAACGTGAAGGTTCATGGTGGACGGGAGATGCACATCGATAACAAGCTGGGTTCAGCAATGGCCAACCCTTACATCGTGTTGGCGGCCACGATAGCGGCAGGACTGGATGGTATTAGGCGTAATCTCAATGCTGAACAGGTTCTAAGCAGAGCTCCAGTTCAGCAGAAACAGTTCCCCATCCCTATTAAACTGGACGATGCTTTAGAGGCTCTGTCAGAGGACAGTGTGATTTGTGGTGCACTGGGAGAGCCTTTCGTGCAGTATTTTCTTGCCATGAAGCGTGTAGAGATTGAGACCCAAGAGCACGATGCTGACAAGAACAAGGGACTTGAGTATTTTATTTAACATCTGAATTTGGTGAATGATTTTGTGTATTCGAAACAAACAAAATACA

Function

symbol description
lgsn Predicted to enable glutamate-ammonia ligase activity. Acts upstream of or within cell differentiation and lens morphogenesis in camera-type eye. Located in actin filament. Is expressed in lens. Orthologous to human LGSN (lengsin, lens protein with glutamine synthetase domain).

NR:

description
lengsin

GO:

id name namespace
GO:0004356 glutamate-ammonia ligase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000056_01864934_01867946.mRNA True 2325 mRNA 0.49 4 1864885 1868212

Neighbor

gene id symbol gene type direction distance location
CI01000056_01685272_01692934 PSMD14 coding downstream 170765 1685248 ~ 1694120 (-)
CI01000056_01671336_01676525 NA coding downstream 188255 1670905 ~ 1676630 (-)
CI01000056_01626198_01642589 SLC4A10, SLC4A10A coding downstream 222296 1625848 ~ 1642589 (-)
CI01000056_01531219_01585175 MCF2L2 coding downstream 279710 1531219 ~ 1585175 (-)
CI01000056_01489840_01520989 ECT2 coding downstream 343532 1489372 ~ 1521353 (-)
CI01000056_01875964_01880351 NA coding upstream 7096 1875308 ~ 1880351 (-)
CI01000056_01901745_01905615 MRPL4 coding upstream 33504 1901716 ~ 1905615 (-)
CI01000056_01906917_01907477 NA coding upstream 38634 1906846 ~ 1909191 (-)
CI01000056_01914048_01917011 PRPH coding upstream 45836 1914048 ~ 1917011 (-)
CI01000056_01929886_01934773 SUOX coding upstream 60786 1928998 ~ 1934773 (-)
G243339 NA non-coding downstream 28275 1836314 ~ 1836610 (-)
G243250 NA non-coding downstream 47514 1804119 ~ 1817371 (-)
G243323 NA non-coding downstream 91891 1772039 ~ 1772994 (-)
G243267 NA non-coding downstream 127467 1734977 ~ 1737418 (-)
G243314 NA non-coding downstream 148752 1715853 ~ 1716133 (-)
G243253 NA non-coding upstream 57821 1926033 ~ 1926510 (-)
G243258 NA non-coding upstream 106531 1974743 ~ 1976440 (-)
G243358 NA non-coding upstream 181724 2049936 ~ 2051757 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003934 lgsn coding NC_007122.7 CM002895.2 11263451 ~ 11266882 (-)