XLOC_003946


Basic Information

Item Value
gene id XLOC_003946
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11404596 ~ 11404890 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008459
GCCGGGTTCAGTGGCGCGCGCCTGTAATCCAAGTTACTGGGAGGCTGAGTCTGCGGATCGCTTAAGTTCAGGGCTTCTGAACTGCAGTGGACTATGTTGATCGGGTGTCCACGCTAAGTTCGGTATCGATATGGTGCTGCTGGGGGAGCTTGGGACCACCAGGTCGTTTAAGGAGGGGTGAACCGACAAAGGCCGGAGACGGAGCAGGTCAAAGCCCCCGTGCTGATCAGTAGTGGGATCGCGCCTGTGAATAGACACTGCAGTGCAGCCTGAgcgacacagagagacgcagact

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008459 True 295 lncRNA 0.58 1 11404596 11404890

Neighbor

gene id symbol gene type direction distance location
XLOC_003941 NA coding downstream 47409 11356893 ~ 11357187 (-)
XLOC_003940 NA coding downstream 50328 11353974 ~ 11354268 (-)
XLOC_003939 NA coding downstream 61022 11343280 ~ 11343574 (-)
XLOC_003937 C11H6orf120 coding downstream 67610 11332652 ~ 11336986 (-)
XLOC_003936 mrpl4 coding downstream 73450 11319141 ~ 11331146 (-)
XLOC_003955 NA coding upstream 46770 11451660 ~ 11451935 (-)
XLOC_003956 krt93 coding upstream 49655 11454545 ~ 11458208 (-)
XLOC_003957 krt94 coding upstream 63676 11468566 ~ 11471857 (-)
XLOC_003958 krt15 coding upstream 110888 11515778 ~ 11518469 (-)
XLOC_003959 krt99 coding upstream 161106 11565996 ~ 11575070 (-)
XLOC_003945 BX324177.6 misc downstream 20466 11383833 ~ 11384130 (-)
XLOC_003944 BX324177.4 misc downstream 23392 11380904 ~ 11381204 (-)
XLOC_003943 BX324177.3 misc downstream 33943 11370455 ~ 11370653 (-)
XLOC_003942 BX324177.17 misc downstream 36706 11367594 ~ 11367890 (-)
XLOC_003938 BX324177.10 misc downstream 65496 11338804 ~ 11339100 (-)
XLOC_003947 BX324177.21 misc upstream 7712 11412602 ~ 11412898 (-)
XLOC_003948 BX324177.24 misc upstream 10623 11415513 ~ 11415809 (-)
XLOC_003949 BX324177.7 misc upstream 19191 11424081 ~ 11424377 (-)
XLOC_003950 BX324177.18 misc upstream 21988 11426878 ~ 11427174 (-)
XLOC_003951 BX324177.16 misc upstream 30557 11435447 ~ 11435743 (-)
XLOC_003933 CR678435.1 non-coding downstream 544490 10859024 ~ 10860106 (-)
XLOC_003927 NA non-coding downstream 1076069 10305130 ~ 10328527 (-)
XLOC_003960 NA non-coding upstream 190104 11594994 ~ 11601880 (-)
XLOC_003962 CR848705.2 non-coding upstream 234593 11639483 ~ 11706136 (-)
XLOC_003972 NA non-coding upstream 760833 12165723 ~ 12166007 (-)
XLOC_003975 NA non-coding upstream 780964 12185854 ~ 12186144 (-)

Expression


Co-expression Network