XLOC_003933 (CR678435.1)


Basic Information

Item Value
gene id XLOC_003933
gene name CR678435.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 10859024 ~ 10860106 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007541
agcctctttaccctttgtgtattactccgcccacatacagccagcaacaagcaaacactacattttgacaaatattactgttgttagacaacaaaatataattttgaggctttttagtcgagaatgtagttgtttagattgcaactatgcagtttatttgcaagaacatagcctatttttaaatatttacaatgtcTGAGAGACAGCTTGTCGGCGacagttgacgttttctatccgcaagatggcgacagaaccgcataataagcccttacgcttagaagatataacagtctgatttctaataTAGcagattaaattaatattaaactggtaagcacacctgccaacattTCCGTTTTTTatgggagtatcccgtatttcagaccaattTTAGTCTCCTGCAAACatcccgttttttttttctttctaaaaaaactCCCGTAAGTTCACCCACCCCCCTCTTTGGTACAATCTGTAAACtaaacacccccgggttgccaactttggtacagtacccgatcaaagcggccgcccaaaacccgctgcatcctcctcaaagtccgcatgtgtttagcgtttttccttatcgcaaacacaacagcagtctggtaacgttAGTGGATTCGTTGTTATTTTCGGGGTTAATTTTTGTGAAATGCCGATTGCAACAGTGAAATACTGCAGACtataacactgtaagaagatatctctgtagacatatgacatttcatgtcacgttcagccttataatcttataGTGTAAGCACAATCAGCAGTTTTGCCATCACTTTAGACAGAGTCATTAAAACACTatctctaaagtgacgttggtgaattagtaatgcttctgctgttctgacgtcagctacagatgtgaatgaatggcggatgaaagtagttcctaataaaaaaaaaaagggtttttagactctc

Function

GO:

id name namespace
GO:0071295 cellular response to vitamin biological_process
GO:0071305 cellular response to vitamin D biological_process
GO:0007584 response to nutrient biological_process
GO:0033273 response to vitamin biological_process
GO:0033280 response to vitamin D biological_process
GO:0001725 stress fiber cellular_component
GO:0097517 contractile actin filament bundle cellular_component
GO:0042641 actomyosin cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102570

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007541 True 933 lncRNA 0.39 2 10859024 10860106

Neighbor

gene id symbol gene type direction distance location
XLOC_003932 psmd14 coding downstream 8088 10832560 ~ 10850936 (-)
XLOC_003931 tbr1a coding downstream 30485 10812949 ~ 10828539 (-)
XLOC_003930 slc4a10a coding downstream 60960 10669461 ~ 10798064 (-)
XLOC_003929 mcf2l2 coding downstream 195902 10467299 ~ 10663122 (-)
XLOC_003928 ect2 coding downstream 402471 10388303 ~ 10456553 (-)
XLOC_003934 lgsn coding upstream 403345 11263451 ~ 11266882 (-)
XLOC_003935 col9a1a coding upstream 414834 11274940 ~ 11301357 (-)
XLOC_003936 mrpl4 coding upstream 459035 11319141 ~ 11331146 (-)
XLOC_003937 C11H6orf120 coding upstream 472546 11332652 ~ 11336986 (-)
XLOC_003939 NA coding upstream 483174 11343280 ~ 11343574 (-)
XLOC_003938 BX324177.10 misc upstream 478698 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 507488 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 510349 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 520798 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 523727 11383833 ~ 11384130 (-)
XLOC_003927 NA non-coding downstream 530497 10305130 ~ 10328527 (-)
XLOC_003922 NA non-coding downstream 1335840 8983651 ~ 9523184 (-)
XLOC_003940 NA non-coding upstream 493868 11353974 ~ 11354268 (-)
XLOC_003941 NA non-coding upstream 496787 11356893 ~ 11357187 (-)
XLOC_003946 NA non-coding upstream 544490 11404596 ~ 11404890 (-)
XLOC_003955 NA non-coding upstream 591554 11451660 ~ 11451935 (-)
XLOC_003925 NA non-coding downstream 1451019 9407671 ~ 9408005 (-)
XLOC_003924 CR788237.1 non-coding downstream 1565613 9292281 ~ 9293411 (-)
XLOC_003923 CR788237.2 non-coding downstream 1572548 9285823 ~ 9286476 (-)

Expression


Co-expression Network