XLOC_003939


Basic Information

Item Value
gene id XLOC_003939
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11343280 ~ 11343574 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008456
GCCGGGTTCAGTGGCGCGCGCCTGTAATCCAAGTTACTGGGAGGCTGAGGCTGCGGATCGCTTGAGTTCAGGGCTTCTGGACTGCAGTGGACTATGTTGATCGGGTGTCCACGCTAAGTTCGGTATCGATATGGTGTTGCTGGGGGAGCTTGGGACCACCAGGTCGTTTAAGGAGGGGTGAACCGACCCAGGCCGGAGACGGAGCAGGTCAAAGCCCCCGTGCTGATCAGTAGTGGGATCGCGCCTGTGAATAGACACTGCAGTGCAGCCTGAgcgacacagagagacgcagact

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006396 RNA processing biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008456 True 295 lncRNA 0.59 1 11343280 11343574

Neighbor

gene id symbol gene type direction distance location
XLOC_003937 C11H6orf120 coding downstream 6294 11332652 ~ 11336986 (-)
XLOC_003936 mrpl4 coding downstream 12134 11319141 ~ 11331146 (-)
XLOC_003935 col9a1a coding downstream 41923 11274940 ~ 11301357 (-)
XLOC_003934 lgsn coding downstream 76398 11263451 ~ 11266882 (-)
XLOC_003933 CR678435.1 coding downstream 483174 10859024 ~ 10860106 (-)
XLOC_003940 NA coding upstream 10400 11353974 ~ 11354268 (-)
XLOC_003941 NA coding upstream 13319 11356893 ~ 11357187 (-)
XLOC_003946 NA coding upstream 61022 11404596 ~ 11404890 (-)
XLOC_003955 NA coding upstream 108086 11451660 ~ 11451935 (-)
XLOC_003956 krt93 coding upstream 110971 11454545 ~ 11458208 (-)
XLOC_003938 BX324177.10 misc downstream 4180 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 24020 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 26881 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 37330 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 40259 11383833 ~ 11384130 (-)
XLOC_003947 BX324177.21 misc upstream 69028 11412602 ~ 11412898 (-)
XLOC_003927 NA non-coding downstream 1014753 10305130 ~ 10328527 (-)
XLOC_003925 NA non-coding downstream 1935275 9407671 ~ 9408005 (-)
XLOC_003924 CR788237.1 non-coding downstream 2049869 9292281 ~ 9293411 (-)
XLOC_003923 CR788237.2 non-coding downstream 2056804 9285823 ~ 9286476 (-)
XLOC_003960 NA non-coding upstream 251420 11594994 ~ 11601880 (-)
XLOC_003922 NA non-coding downstream 1820096 8983651 ~ 9523184 (-)

Expression


Co-expression Network