RNA id: TCONS_00008456


Basic Information

Item Value
RNA id TCONS_00008456
length 295
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id XLOC_003939
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11343280 ~ 11343574 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGGGTTCAGTGGCGCGCGCCTGTAATCCAAGTTACTGGGAGGCTGAGGCTGCGGATCGCTTGAGTTCAGGGCTTCTGGACTGCAGTGGACTATGTTGATCGGGTGTCCACGCTAAGTTCGGTATCGATATGGTGTTGCTGGGGGAGCTTGGGACCACCAGGTCGTTTAAGGAGGGGTGAACCGACCCAGGCCGGAGACGGAGCAGGTCAAAGCCCCCGTGCTGATCAGTAGTGGGATCGCGCCTGTGAATAGACACTGCAGTGCAGCCTGAgcgacacagagagacgcagact

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006396 RNA processing biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007547 lncRNA downstream 17660 11319190 ~ 11325620 (-) False XLOC_003936
TCONS_00007541 lncRNA downstream 483174 10859024 ~ 10860106 (-) True XLOC_003933
TCONS_00008768 lncRNA downstream 1014753 10305130 ~ 10328527 (-) True XLOC_003927
TCONS_00008455 lncRNA downstream 1820096 9521226 ~ 9523184 (-) True XLOC_003922
TCONS_00008766 lncRNA downstream 1820663 9510569 ~ 9522617 (-) False XLOC_003922
TCONS_00008457 lncRNA upstream 10400 11353974 ~ 11354268 (-) True XLOC_003940
TCONS_00008458 lncRNA upstream 13319 11356893 ~ 11357187 (-) True XLOC_003941
TCONS_00008459 lncRNA upstream 61022 11404596 ~ 11404890 (-) True XLOC_003946
TCONS_00007564 lncRNA upstream 108086 11451660 ~ 11451935 (-) True XLOC_003955
TCONS_00008769 lncRNA upstream 251420 11594994 ~ 11601880 (-) True XLOC_003960
TCONS_00007550 mRNA downstream 6294 11332652 ~ 11336986 (-) True XLOC_003937
TCONS_00007546 mRNA downstream 12134 11319141 ~ 11331146 (-) False XLOC_003936
TCONS_00007545 mRNA downstream 12228 11319141 ~ 11331052 (-) False XLOC_003936
TCONS_00007544 mRNA downstream 41923 11275540 ~ 11301357 (-) True XLOC_003935
TCONS_00007543 mRNA downstream 41997 11274940 ~ 11301283 (-) False XLOC_003935
TCONS_00007565 mRNA upstream 110971 11454545 ~ 11458208 (-) True XLOC_003956
TCONS_00007566 mRNA upstream 124992 11468566 ~ 11471857 (-) True XLOC_003957
TCONS_00007567 mRNA upstream 172204 11515778 ~ 11518469 (-) True XLOC_003958
TCONS_00007568 mRNA upstream 222422 11565996 ~ 11575070 (-) False XLOC_003959
TCONS_00007571 mRNA upstream 252399 11595973 ~ 11625630 (-) False XLOC_003961
TCONS_00007551 other downstream 4180 11338804 ~ 11339100 (-) True XLOC_003938
TCONS_00007549 other downstream 12190 11330725 ~ 11331090 (-) True XLOC_003936
TCONS_00007548 other downstream 12230 11325522 ~ 11331050 (-) False XLOC_003936
TCONS_00007494 other downstream 3217085 8111369 ~ 8126195 (-) True XLOC_003913
TCONS_00007477 other downstream 4226917 7116247 ~ 7116363 (-) True XLOC_003904
TCONS_00007552 other upstream 24020 11367594 ~ 11367890 (-) True XLOC_003942
TCONS_00007553 other upstream 26881 11370455 ~ 11370653 (-) True XLOC_003943
TCONS_00007554 other upstream 37330 11380904 ~ 11381204 (-) True XLOC_003944
TCONS_00007555 other upstream 40259 11383833 ~ 11384130 (-) True XLOC_003945
TCONS_00007556 other upstream 69028 11412602 ~ 11412898 (-) True XLOC_003947

Expression Profile

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