RNA id: TCONS_00008769


Basic Information

Item Value
RNA id TCONS_00008769
length 2114
lncRNA type sense_over
GC content 0.35
exon number 2
gene id XLOC_003960
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11594994 ~ 11601880 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caTGTTTTAACTTTATGATATTGATGTTTATGTCACCTGGGGGAAAAATCTATAGTATGGTGAACTATTCatcaaaatattaatgaaatagcTAGCCAACTGTACATTTCATTTAAGTTTCCAGATGAAGAAGAAAAGTCAAATGACAAATAACAGTTTTATATTATCAAGTGTTATAGGTTATAggatgaccccccccccccccctccgattttatataattaaaacaaatttaaacatttatcgtgactgaaatgttttgttttgagaaTGAATCAAATGACTAACACACTATATTGTGAATGTTTACATTCAAGCTTTCCTTTAAAAACAATTGAACTTGTTGACCAGCTTCAAGTCTCATCTTCTTCACGTTCAGTTATTCATAAGCATGATCAcataagctgcttttccactgtGCTGTATAGTACTGCCCAGTTCACTTTGGTTTGGTTTTGCTCAGCTCAGTTTGAATTTCCACTGCAGTTTAGTGCTGCTTAAAGTAGGTGGGGTTATTGATAGTATTGCGCCGCCTCTACTGCTGTGATATCCTGAAAGCTGCCATTTCAGGTGTCTTATTGTTGctgtggtaaaaaaaaagaaagttgaatTGTGCTAACCAACAATAAAGCAATGTCTGCTGCTGCTGAGTAATTAAAGATGCTGTAAAGTGCATTAGTTCAATAACTTTTCTTTGATATTTACATAGTAGTTATGCGGCTTAAGTTAAAACATTTTTCCAGATTTGATATACTCGTTCATAACCAAAGGATTTACCTCTAGAATGAAAGCTCTAGTTTGACCGTATTTGGATATTAATAAGCTCTGCCCTGTTGCTCTATGGCTTATGTCAATACCTGCTCTCTAGAAAGAGTACCACAGTTTTGTTCCAGAGTTGTGTTGTggataaactatataaaaaatgaGGCAGGAATTATTATCAACCCCCTCATAAACAGATGATATTTTTAAGATCATTGGCCTCCTTTCACAATATGAGCTAAGAGATATGACATGAtgcattaaacatttatattcagcAGTTTATATGTGTCTGTTGCTTCATCACAAACATGCACAGCATATTTCTCAATATACACATTACCTAACAAATGAAACAGACTTTATGCTTCTGGGTGGctctgaataaatgtataatccgtatatcctgcattttgcatttaGATGTACTGTTAACAGATAGTTAGCTAAGTAAACTATATAGATAGCGCTTTTCAAGTATGTCTAGATATAAAGAAACTGTATAAACCTTGAAGGCCATTCCACATCTGAACTTATCAGCCCTTCCTGTGGGTACTGTCTCTtttctcctcaattgtaagttgtTTTAGACCGTCTGCCAAATGCCAAatgatgtaaatgtaatgtaaatcaaTGGACCTGAACTCTCAacgcatttctttaaaaaataaataataatctataAGAGTACTGGCGCAGCCATTTAACAGCTATCTCTGTGTTTGTAaattatagaaaacaatgttAAGACGTGGCACAGTGCAGCAGGCTTTAGTCTCCtattttcttttcaaaataagagtcccgcATACATAGTAAATCTGATGTATGCTTAGATAAATTTAAAGATAAGGAAAAGATTCTGATTGTTGCAATCTCACTAGCAAACATTGTGAACAATCAGACACAGCCTGGAGCGTGCATAATAATGATTCTATGTGCAATGCAACAGTTTTGTTCCAATTGGACAAATTTTAACTGGTATTTTGCACTCAAAGGATTTGCTTGAGAACAAgaaaacaatggtgtttgaggcaCATGGTATGTAATTTCCATGAAttgaactcttattattcaggGATGCCTAGGTAAAATCCAGATTTTCATACTATGGcacttttagatatttttaattgGTGTCTTGTTGCAAATCTGAAGATGCTGGTTTTGACTAATCTGTGATCAGCAGTGTATATACATCACATTTTGATGGTGGCGTGCCTGGCTTGGAGCCTCACCTGAGGTTGCACTAATTAAAGTATGAGGTGCTAGGTATGAAACGCAGTAGAAAATCTCCCAAAAGTAAGCTGTACTGAACCGAACTGAGCTGAACATGTTATGTTGTACTTCAG

Function

GO:

id name namespace
GO:0022610 biological adhesion biological_process
GO:0030154 cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0042221 response to chemical biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032502 developmental process biological_process
GO:0007155 cell adhesion biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007564 lncRNA downstream 143059 11451660 ~ 11451935 (-) True XLOC_003955
TCONS_00008459 lncRNA downstream 190104 11404596 ~ 11404890 (-) True XLOC_003946
TCONS_00008458 lncRNA downstream 237807 11356893 ~ 11357187 (-) True XLOC_003941
TCONS_00008457 lncRNA downstream 240726 11353974 ~ 11354268 (-) True XLOC_003940
TCONS_00008456 lncRNA downstream 251420 11343280 ~ 11343574 (-) True XLOC_003939
TCONS_00007573 lncRNA upstream 37603 11639483 ~ 11706093 (-) False XLOC_003962
TCONS_00007574 lncRNA upstream 37773 11639653 ~ 11706084 (-) False XLOC_003962
TCONS_00008770 lncRNA upstream 44626 11646506 ~ 11706136 (-) True XLOC_003962
TCONS_00007591 lncRNA upstream 563843 12165723 ~ 12166007 (-) True XLOC_003972
TCONS_00007594 lncRNA upstream 583974 12185854 ~ 12186144 (-) True XLOC_003975
TCONS_00007568 mRNA downstream 19924 11565996 ~ 11575070 (-) False XLOC_003959
TCONS_00007567 mRNA downstream 76525 11515778 ~ 11518469 (-) True XLOC_003958
TCONS_00007566 mRNA downstream 123137 11468566 ~ 11471857 (-) True XLOC_003957
TCONS_00007565 mRNA downstream 136786 11454545 ~ 11458208 (-) True XLOC_003956
TCONS_00007550 mRNA downstream 258008 11332652 ~ 11336986 (-) True XLOC_003937
TCONS_00007575 mRNA upstream 180093 11781973 ~ 11791718 (-) False XLOC_003963
TCONS_00007576 mRNA upstream 181584 11783464 ~ 11792766 (-) True XLOC_003963
TCONS_00007577 mRNA upstream 242243 11844123 ~ 11878099 (-) False XLOC_003964
TCONS_00007579 mRNA upstream 264398 11866278 ~ 11890001 (-) False XLOC_003964
TCONS_00007580 mRNA upstream 265417 11867297 ~ 11882982 (-) True XLOC_003964
TCONS_00007569 other downstream 21234 11566351 ~ 11573760 (-) True XLOC_003959
TCONS_00007563 other downstream 147509 11447189 ~ 11447485 (-) True XLOC_003954
TCONS_00007562 other downstream 149009 11445689 ~ 11445985 (-) True XLOC_003953
TCONS_00007561 other downstream 156807 11437891 ~ 11438187 (-) True XLOC_003952
TCONS_00007560 other downstream 159251 11435447 ~ 11435743 (-) True XLOC_003951
TCONS_00007578 other upstream 243721 11845601 ~ 11870971 (-) False XLOC_003964
TCONS_00007587 other upstream 494319 12096199 ~ 12104916 (-) False XLOC_003969
TCONS_00007590 other upstream 559778 12161658 ~ 12161955 (-) True XLOC_003971
TCONS_00007592 other upstream 566122 12168002 ~ 12168298 (-) True XLOC_003973
TCONS_00007593 other upstream 567481 12169361 ~ 12169654 (-) True XLOC_003974

Expression Profile

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