XLOC_003964 (wipf2a)


Basic Information

Item Value
gene id XLOC_003964
gene name wipf2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11844123 ~ 11890001 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007577
ATGGGAGGGTTGTTCAGTGGAGGAGTGCCTAAATTACGACCCGTCGGTGACAGCTCTGTAGGACGATCAGCTTTGCGTCCACCTGGCTCTCGCCCTGCAGTACCTCGAGGTCTGAGTAATTCTGAAGTGGACGGCTCCAGTCGTGGTGATGGAAGTCGCACCTCACCTCCCGAACAGCAGCGAAATCATCGTCCCTCACTTCCAGACGTCTCCAAACCATCGGTTCCAAGCAGTTCTTCAAAACCCACCAACTCcgctcctcctccacctccaccCTTCAATCGCGCTGGCAATCGCGGACCCTCTTCAGCTCAACAGGGCTCTGGGCAGAGCCGTGACAAACCCtttccaccaccaccaccacctgtaAGCAAAGGGCCTCCTCCTCCACCTTCACCTGCTCGTGAGGGGACTCCTAGACATCCTCCCCTTTCATCTCGctcctcttcatcatcttcaATTTCCTCTGGAAATGCACCTCCACCACCTCCACCTTATCGTCAGCCACCTGCTGCAAATGGTGACCCAGCCCCGGAGTTGCCACAGAGGCGAAACTCGCTTAACAGAAGAGGCCATGGTAATGCTAATGCCCGTAGCCAAGCTCCACCTCCTCCACCACCTTCCCAGCAGAACAGACGCCCCCCTCCACCAGCACGTGATCCAGTGGGACGCAGCACAGCTCCTCAGGTTCCTCCTCCTATATCTCGTAATGGTATTCGGGAAACACCACCTCCTCCGCCTCCTTACCGCGGTGGCCCACAGACCTCCTCTGAGCCCCCGAGTCGTTCGAAGGCTCCTCCTCTGTCCTCTTCTGGACGTCAGTCTTCTGGACATGCGCCTCCTCCACCTCCACCTCTCCGCAATGGACACACGTCTTCCGCCTCAAGATCCTTTGCTGATGATTTTGAGTCCAAGTATGATTTCCACCCAATAGAGGAGGACCAAAAGAAACGGAAATACGTACACGCCGTATACgCAGGTCCAGCGGGTCTTGGATGTACTGGCACAGCAGGCTGCTTTACCGACTGAGCGGACACCATCTCAACGCTAATCGGTTGTAGCAGTTTGTCTTCTCTGTTCTGGGTCCAGAGAAGTACAAAATCTATATTGCCTGTCATCCTCATGTTTCTCGCTGGCTCATCATCTGTACTGGAACTGGATACTGATGTTGCACTTTGATCGGTATCATACAGCCCAGAGCTGTTGGACTTTCCTGCAATTGTTGATATTGTTCCTGtgttgaacaaacaaaaaaacaacatcatgGATTAACAATCTGATAAAGGACTAAATCAAACTTATCATCTTTATATAATGCATGAAGGTGTCGACATTTTTCATATGATTTTGGGTTCTGTTCGTTTTCCCCCATGGGTGGGGTGCGAatcacaaaaattaaaaactgcttttatcctagtcaaaataaaacaaataagactatctccagaagaaaaaagattatcagacatactgtgaaaatttccttgctctgttaaacatcatttgggaaatatttaaaaaaaaagaaaaaatcaaatgGAAGTTAATAATTCTGCCATCTACTGtacattttaatatatgtaaatataaatcacCTCTTGaacagaaattaaaaacaaaaagcttcTCACCGTTGCTCTGTTGACTCAAGTTGGCTTCACGGCAAACCCGTGGTGATGGACACTCCAAGATAATAGTGTAATAATCAGGCAGATCCTGCCAGTCCAGCAGCTGAATGGTCTTTGGACCTCTGAGGCTCTTATTAACAAGGGCTAATAGACCGACTTCTAATGGAAGGGCTACAGGATGACCAggctagaaaagaaaaaaaaatgttagtccATTTTAAtccaaattatttacattttcagtttAAAAAGATGGCTTTCACACTGCTTAATCATCATTCTGTACTCCTTTTTAACTAAAGGTAAAAGTacaatttagcatttattttttgtactatggaagtcaatggttacaagtatTCAGTATTCtttcaacaaaagaaactcaaaaagattTGGAACCACCTGATGGTGAATGTATGatggatgaactatccttttaatttgaataattttgaaaaaaataaatcaacattaaaTTGAACTTTCTCATGCAAGTCGTCACATTTAcgaaaaatgtattcaaatataaGTGAACTGTTAGCGTTTCCTAAAAATGATTGTGTCAGTAAATACATCAAGTTTACTTCTATCTAGGAATTGTGTCAGTATAGTCAAAGTTACATTTCTAAAGTCTTTTTCTCAgagttacagtgctcagcataattgagtacaccccattttgaaaatgaatattttatgcatttctcagtgaatataggcaatgtattttggtgcatttaaacaaaacagattcattaaacacatatatttatcaaaataacatttttgtcaccaaacatatttagaaattgaaagataatacaataaaatttagtaaaatattgcaaaaattacaacccaattttaataaaatttttaaatattttttgcttctcttgatttttcctcttttttttaatttgtatttaatacttttctatgacacataaatttgggtgtactaattttggattgttatcataagttattttgttagataagctccagatttgacttcagtactggCTAATCTAAtctacatgcacaaatataatattgtctagcttcctataaaaatatgaatttaaaagaggaTTGTGAAGGGTGTATTTATAtaagctgagcactgtacatacagtatataataaatgCATCAAAACCAC
>TCONS_00007578
CCGCAATGGACACACGTCTTCCGCCTCAAGATCCTTTGCTGATGATTTTGAGTCCAAGTATGATTTCCACCCAATAGAGGATTTTCCTCCACCTGAAGAATACAGAAACTTCCCGAAGAGCTATCCCAGCCACAACCACAACAACAGAGTGCGAGGtgctcctccagctcctccagttGGAGGAAGATGAAGAGAATTCAGTGAAGAGGAGGACCAAAAGAAACGGAAATACGTACACGCCGTATACgCAGGTCCAGCGGGTCTTGGATGTACTGGCACAGCAGGCTGCTTTACCGACTGAGCGGACACCATCTCAACGCTAATCGGTTGTAGCAGTTTGTCTTCTCTGTTCTGGGTCCAGAGAAGTACAAAATCTATATTGCCTGTCATCCTCATGTTTCTCGCTGGCTCATCATCTGTACTGGAACTGGATACTGATGTTGCACTTTGATCGGTATCATACAGCCCAGAGCTGTTGGACTTTCCTGCAATTGTTGATATTGTTCCTGtgttgaacaaacaaaaaaacaacatcatgGATTAACAATCTGATAAAGGACTAAATCAAACTTATCATCTTTATATAAT
>TCONS_00007579
AACGTTTTGGCTTTTTTAACTTTACAAGAGAAAGAGCTTATCCATGTAGTTACCCTAACGTACAGGTCTCACTTTCCGGTTGCATTCGGTTTTTTTCGGCCTCCTGCCTCCATTTTGTACCGACTGCGGGATTTCCGGGATTCCATTGAACTGGGTTCGCTGAAGCCCAGCGGTCTGTCGTGAAACAACATCGCCCCAATTCACAGGGCAGCAATGTTAATGTCAACAAGCGATAAGGTTCTGTAAATCTTTGCCTTTCGTGCTTTCATTTCTCGCCGTGGACGGTTTGTAACAACTTTAGAGAGTTGGCAGAAACCAGCCGTCAATATGACAGCGCACCACTGTAAGCTCTCGCCCGACTAACTTAACGTTAGTTAACTAACTTTCCCGTGTTTATTCGGTGACCGGATAGGCAGAAGAAGATCATCGGCTGAAGAACAGACGGTTACTGTGTGACATTAATGTTGTTTGGGATAAGATATCAGTCACATCGCGACCGACAGAGTTCTGTGAGGATAAGTTCTGAAGATTGAGAAGACTGTTGTCGTTTTTGAAGGTTTGCCAGGATGCCTATTCCTCCTCCTCCCCCTCCGCCTGGACCTCCACCACCCCCCACCTTCAGCCAGGCAAACACGACCGCTCCAAAACTGAACAGAGATGAAGCAAAAGGAAGAGGTGCTCTTCTGTCAGACATCTGTAAAGGTGCCAAACTGAAGAAGACGACCGGGGTCAATGACAGAAGTGCACCTGTTATTGAAAaggcTGGAGGTCGAAGTGgcggaggaggaggtggaggcgGCGGTGGcagtagtggtggtggtggtggtggaggaggaggaggtggtttTGGAGGTAGCTCTGGTCCAAAGGCCATGGGAGGGTTGTTCAGTGGAGGAGTGCCTAAATTACGACCCGTCGGTGACAGCTCTGTAGGACGATCAGCTTTGCGTCCACCTGGCTCTCGCCCTGCAGTACCTCGAGGTCTGAGTAATTCTGAAGTGGACGGCTCCAGTCGTGGTGATGGAAGTCGCACCTCACCTCCCGAACAGCAGCGAAATCATCGTCCCTCACTTCCAGACGTCTCCAAACCATCGGTTCCAAGCAGTTCTTCAAAACCCACCAACTCcgctcctcctccacctccaccCTTCAATCGCGCTGGCAATCGCGGACCCTCTTCAGCTCAACAGGGCTCTGGGCAGAGCCGTGACAAACCCtttccaccaccaccaccacctgtaAGCAAAGGGCCTCCTCCTCCACCTTCACCTGCTCGTGAGGGGACTCCTAGACATCCTCCCCTTTCATCTCGctcctcttcatcatcttcaATTTCCTCTGGAAATGCACCTCCACCACCTCCACCTTATCGTCAGCCACCTGCTGCAAATGGTGACCCAGCCCCGGAGTTGCCACAGAGGCGAAACTCGCTTAACAGAAGAGGCCATGGTAATGCTAATGCCCGTAGCCAAGCTCCACCTCCTCCACCACCTTCCCAGCAGAACAGACGCCCCCCTCCACCAGCACGTGATCCAGTGGGACGCAGCACAGCTCCTCAGGTTCCTCCTCCTATATCTCGTAATGGTATTCGGGAAACACCACCTCCTCCGCCTCCTTACCGCGGTGGCCCACAGACCTCCTCTGAGCCCCCGAGTCGTTCGAAGGCTCCTCCTCTGTCCTCTTCTGGACGTCAGTCTTCTGGACATGCGCCTCCTCCACCTCCACCTCTCCGCAATGGACACACGTCTTCCGCCTCAAGATCCTTTGCTGATGATTTTGAGTCCAAGTATGATTTCCACCCAATAGAGGATTTTCCTCCACCTGAAGAATACAGAAACTTCCCGAAGAGCTATCCCAGCCACAACCACAACAACAGAGTGCGAGGtgctcctccagctcctccagttGGAGGAAGATGAAGAGAATTCAGTGAAGAGGAGGACCAAAAGAAACGGAAATACGTACACGCCGTATACggtatatatttatgtgtgtgtatgtacatacacacattacacatacAGATGCATCAAATAATGTGACATCTTTTTAGAAAAACACTACAAATACCAACACGATCTCAGATCCAAACCACTCCAGAATGCTGTACCTCTAGATCTGAAAACACTGTGCAATATTTCTCCTGCTGCccatgaaaaagaaaaagcacCTTTTAATGTTGTGTCTGACGGAAAACAGCACAGAAAAGAGACCAAGGCAGAGCAGAAAACTCCAGTTACCATGAAGCTAGATGTGTACAGTCTACGTTTCCGTAAAGCAAccaaagttttgtttttaattcagtgAGAAAGTGTGTAGCACTTGTAGATTAACCATGCCTATGCATATCAGACGCAGAGTCTGTATTTCTCTGGACAATCCTTTTATTCtcactttttattctttttcttttataatcAATGAGGAATGACTTTAAATTCTGAATGTTTGTTTACACTACAAGGGCCATAAAACAACCTTGTTGCTTGTTCAGTTCAAGGTTGTGTGTTTTCCTGATTATTCTATAAAATCAGACTACAACAGCCAAGTTTTAAACtggctttttaaactttttttaaactattttcattttttggctcCGTTAAATTGAAAGCAAATTGACCAAATTAACACTAAGTGCCAGCAGATCCATTTTGAAATGGTGCACACACTTCCTCTTGCTGGGTACCAATGCTTCTGGGTCATTGCTCTCCCGTCGGTTTTGTTTTAAACCTAAGCCAAATTTTAGGAAATGCATTCCAATGGATTTTTGTATAAACACACTACAGATGCTTTTTCAAACGGGCCTGTATTAATTTTATTACGTTGTATTATATGTTATTAAGTGACCTAGTGTGTTCATAATGTTCAGGCACTTCTGAAAGAAGCTATTATTGGGAATTGGTGACCAATCATTCTGACTTGTAaaagtcattttatttgtttctttaaatatgTGTCAGTATAATTCTGAAATAAAATGTGGTAATGGGTAA
>TCONS_00007580
AGTTCTGTGAGGATAAGTTCTGAAGATTGAGAAGACTGTTGTCGTTTTTGAAGGTTTGCCAGGATGCCTATTCCTCCTCCTCCCCCTCCGCCTGGACCTCCACCACCCCCCACCTTCAGCCAGGCAAACACGACCGCTCCAAAACTGAACAGAGATGAAGCAAAAGGAAGAGGTGCTCTTCTGTCAGACATCTGTAAAGGTGCCAAACTGAAGAAGACGACCGGGGTCAATGACAGAAGTGCACCTGTTATTGAAAGTAAGTCGACTGGACTCCACTACAAAATACAAGTCATTTTGAtaagtaatttttaaataattgcattaatatttgatcaacaaaactattttttttacagaggcTGGAGGTCGAAGTGgcggaggaggaggtggaggcgGCGGTGGcagtagtggtggtggtggtggtggaggaggaggaggtggtttTGGAGGTAGCTCTGGTCCAAAGGCCATGGGAGGGTTGTTCAGTGGAGGAGTGCCTAAATTACGACCCGTCGGTGACAGCTCTGTAGGACGATCAGCTTTGCGTCCACCTGGCTCTCGCCCTGCAGTACCTCGAGGTCTGAGTAATTCTGAAGTGGACGGCTCCAGTCGTGGTGATGGAAGTCGCACCTCACCTCCCGAACAGCAGCGAAATCATCGTCCCTCACTTCCAGACGTCTCCAAACCATCGGTTCCAAGCAGTTCTTCAAAACCCACCAACTCcgctcctcctccacctccaccCTTCAATCGCGCTGGCAATCGCGGACCCTCTTCAGCTCAACAGGGCTCTGGGCAGAGCCGTGACAAACCCtttccaccaccaccaccacctgtaAGCAAAGGGCCTCCTCCTCCACCTTCACCTGCTCGTGAGGGGACTCCTAGACATCCTCCCCTTTCATCTCGctcctcttcatcatcttcaATTTCCTCTGGAAATGCACCTCCACCACCTCCACCTTATCGTCAGCCACCTGCTGCAAATGGTGACCCAGCCCCGGAGTTGCCACAGAGGCGAAACTCGCTTAACAGAAGAGGCCATGGTAATGCTAATGCCCGTAGCCAAGCTCCACCTCCTCCACCACCTTCCCAGCAGAACAGACGCCCCCCTCCACCAGCACGTGATCCAGTGGGACGCAGCACAGCTCCTCAGGTTCCTCCTCCTATATCTCGTAATGGTATTCGGGAAACACCACCTCCTCCGCCTCCTTACCGCGGTGGCCCACAGACCTCCTCTGAGCCCCCGAGTCGTTCGAAGGCTCCTCCTCTGTCCTCTTCTGGACGTCAGTCTTCTGGACATGCGCCTCCTCCACCTCCACCTCTCCGCAATGGACACACGTCTTCCGCCTCAAGATCCTTTGCTGATGATTTTGAGTCCAAGTATGATTTCCACCCAATAGAGGATTTTCCTCCACCTGAAGAATACAGAAACTTCCCGAAGAGCTATCCCAGCCACAACCACAACAACAGAGTGCGAGGtgctcctccagctcctccagttGGAGGAAGATGAAGAGAATTCAGTGAAGAGGAGGACCAAAAGAAACGGAAATACGTACACGCCGTATACg

Function

symbol description
wipf2a Predicted to enable actin binding activity. Orthologous to human WIPF2 (WAS/WASL interacting protein family member 2).

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121219-6 Predicted to enable actin binding activity. Orthologous to human WIPF2 (WAS/WASL interacting protein family member 2).

Ensembl:

ensembl_id ENSDARG00000045298

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007577 False 2794 mRNA 0.41 6 11844123 11878099
TCONS_00007578 False 588 nonsense_mediated_decay 0.45 4 11845601 11870971
TCONS_00007579 False 2996 mRNA 0.47 8 11866278 11890001
TCONS_00007580 True 1574 mRNA 0.53 6 11867297 11882982

Neighbor

gene id symbol gene type direction distance location
XLOC_003963 cdc6 coding downstream 51357 11781973 ~ 11792766 (-)
XLOC_003962 CR848705.2 coding downstream 137987 11639483 ~ 11706136 (-)
XLOC_003961 si:dkey-28e7.3 coding downstream 218493 11595973 ~ 11625630 (-)
XLOC_003960 NA coding downstream 242243 11594994 ~ 11601880 (-)
XLOC_003959 krt99 coding downstream 269053 11565996 ~ 11575070 (-)
XLOC_003965 si:ch211-69b7.6 coding upstream 1579 11891580 ~ 11910225 (-)
XLOC_003966 abcc10 coding upstream 21398 11911399 ~ 11965033 (-)
XLOC_003967 sp2 coding upstream 93464 11983465 ~ 12008001 (-)
XLOC_003968 socs7 coding upstream 119734 12009735 ~ 12051805 (-)
XLOC_003969 mrpl45 coding upstream 206198 12096199 ~ 12104917 (-)
XLOC_003954 BX324177.9 misc downstream 396638 11447189 ~ 11447485 (-)
XLOC_003953 BX324177.8 misc downstream 398138 11445689 ~ 11445985 (-)
XLOC_003952 BX324177.23 misc downstream 405936 11437891 ~ 11438187 (-)
XLOC_003951 BX324177.16 misc downstream 408380 11435447 ~ 11435743 (-)
XLOC_003950 BX324177.18 misc downstream 416949 11426878 ~ 11427174 (-)
XLOC_003971 BX469912.7 misc upstream 271657 12161658 ~ 12161955 (-)
XLOC_003973 BX469912.11 misc upstream 278001 12168002 ~ 12168298 (-)
XLOC_003974 BX469912.4 misc upstream 279360 12169361 ~ 12169654 (-)
XLOC_003979 BX469912.8 misc upstream 330889 12220890 ~ 12221186 (-)
XLOC_003983 FO904934.1 misc upstream 363859 12253860 ~ 12254156 (-)
XLOC_003955 NA non-coding downstream 392188 11451660 ~ 11451935 (-)
XLOC_003946 NA non-coding downstream 439233 11404596 ~ 11404890 (-)
XLOC_003941 NA non-coding downstream 486936 11356893 ~ 11357187 (-)
XLOC_003972 NA non-coding upstream 275722 12165723 ~ 12166007 (-)
XLOC_003975 NA non-coding upstream 295853 12185854 ~ 12186144 (-)
XLOC_003977 NA non-coding upstream 323148 12213149 ~ 12213431 (-)
XLOC_003997 NA non-coding upstream 539382 12429383 ~ 12491279 (-)
XLOC_003998 NA non-coding upstream 540154 12430155 ~ 12465409 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000305_00168300_00170914 NA coding CI01000305 null 168300 ~ 170919 (+)