XLOC_003968 (socs7)


Basic Information

Item Value
gene id XLOC_003968
gene name socs7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12009735 ~ 12051805 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007585
ATGAACAACGCGCAAGATATGTCTCCCGATTTTGTCTTGATGCGCCTGGTCTCCGCGGCCGAGGATGACCGCTTGGACGAGGAGAATGGGAATCTGTCGTCGGGCACTGGACTGACAGTGGCTATCAAGGGGAACTTTGAATGCACGCAGAATCACGGCATTATCTCGGCCGTGAACAAAGCTCCGCAGGCCAGCGGAACGGAGGCACCTGACGCGGGAGTGATGGCGACCAGACCTGCGCTGTCTGTGCCGCCGCCTCCTCTCCATTCAGCCGAGGCCCACGGGTACGATCTCACCCACCGAGGTGGAATGGGGCCTCAGCTGTTGGTATTCAGAAACATATCGAGAGACTCTGAAGGATTTTCCGAGAACAAGTCGGAGGATCAGCGCAGGGCTTTTGAGGACCAAGCGCTACTCGCTTCCGAGTCCGGCGCTGTGGACGCTCAGCATCCGCCTACATGGACGCTGCATCCACAGCTCAAACTGCCAGCGGTTGCTACGGATACGGATGGAGGCGAGCTCTGCCACCGGCATCGCTTGATCACAGACCAACAGGACTGGCCGCCGGTTGTGGAGCACAAAACGAGCTCGATGACAGTGCAGCGGCAGCTCCAGCTCCCCGAAGGTCCAGTTCTGGAGCTCGCGAGGAAATTCGGCGAGCTGGGAGTTGCTCCCGTACCCGAATTTCTGCTCAAGGATGGCGAGCTGCAGCACTGCTCCTGTCAAAGCGTGCTGGGCTCGGCGGGGATGCGGCAGGGAGAGGACCCGACCGAGACCAGCGATGCTTTGCTGGTGCTGGAGGGCCTCGGGTCAGAGGAGGTGAACGGCCTGGGCATCAACGCCTGTCAGAAGCCCGAGTCCCAGACCACGGAGCCCGGCGCGTTTGCGCTAAAGTGTTTCCCCTCGGTTCTGTCCGGGCAAGCTATGGGGGTGTCCGGGGGACTTTGCTCGCCGACGTGTTGCTTGTTGCGAGACTCTGTAAACAACAGGCCCCAGGCTCCCGCCGCTGACAAACTGATTCCCGAGGTGATTTCCCAAGCCGAACCCAGCCAGGAGACGCCATGCTCCAGCCAGGCGTCCACGCCGAAGGCCCGGAGTTCGAGCCGGGCGCATCTTTCCGCAGCGAGCGGGGGAGAGAAGACTCTAAAAGTACCAGGGAAATCCAGGAAGGGCTCGCTTAAAATCCGACTCAGTAAACTTTTCAGAACTAAAAGCTGTAGTGGCTCTAACAACCTTTTGGACAAAAGACCTTCAGTCACGTTCTCCATATCCTCTGCGGGAAGTTTAGTTGACATGTCTGGAGCTATCGGTGGAGAACAAGACACGAGCAGCCAACCTGGACTAACAAGGGCACAAAGTGCTTTCTCTGCAGCCTCTTTTACTCCAGTTTTCACAgGAGAGACGGTGTCGTTAGTTGATGTGGACATCTCACAGCGAGGAAGAAACTCTCCTCATCCTCCCACTCCTCCACCTCCCCCTCGACGGAGTCTCAGTCTGCTGGACGATATAGGTGGGCCGCAGCCTGGGCCTTTCCTAGTGAGCGTAATGGGGGCATCCCTGCAGTCTCTCCCTCtgcctcttcctcctcctccccctCTCCACGCCACCATCCAGCATAGTCTCAGCCTCAATGATGCTTTCTTCCGGGCACTTCCTCATTCAGCTGCATCACCAATGGAGAATCCAGCCCCTGCCAGACTAGCTCCGCCGCAAGTCATGTGCCCGCTAAGAGGGGCCGATTCCAGTAGCTTCACTGCCAGCCTGAGAGAGCTGGAGCGGtgtgGCTGGTATTGGGGGCCGATGAACTGGGAGGATGCTGAAATGAAGCTGAGAGGGAAGCCTGATGGCTCGTTTTTGGTGCGGGACAGTTCAGACCCACGATACATCCTCAGCCTCAGCTTTCGCTCACAGGGAGTCACACACCACACGCGTATGGAGCACTACAGAGGAACCTTCAGTTTATGGTGCCACCCTAAGTTTGAGGATCGCTGTCATTCTGTGGTGGAGTTCATCGAGCGAGCCATTATGCACTCAAAAAATGGGAAATTCCTCTACTTCCTACGTTCACGTGTACCTGGGTTGCCCCCCACCCCTGTACAGCTGCTTTATCCAGTCTCACGCTTCAGCAATGTAAAATCCCTCCAGCATCTGTGCCGTTTCTGCATCCGACAGCTCGTCCGCATAGATCACATCCAGGAGCTGCCTCTGCCCAAACCGCTCATTGTCTACTTGAGGAAGTTCTATTACTATGATCCAGAGGAAGAGATGTACCTGTCAATCAAAGGCATGCGCCAGGCAGCAGGAGTGGAACAGGAAGCAGAGTCTGAAACATAGCCAGCCGGATCGGTCCGTTTCACTAATTTCTATGTGTGGATATTGGATGGAACAGCGCATGGACACTTCCTGGTGCACAGCTCCCTGCCAGTCTTCCAGCAGACGCCAATGAACATCAGCCGACTGGCATCTCCTCTTTGACCAATATCGGACAGAGGGAGATCAGAGGAGTGCTGGAATACTGTCTATGTTGAGCAGGCAAATCAAATTCAGAGACTTTGACTTGATCGACAAAGGACTCGAAAGACTGCTAAAAGTGGActtcaaatattaaattaaataagatacGGACTGAGGACATTTGACTTGGGGTACTAGCAAACGCCTTCATCTGTAGGTTATATTACGCTGGAGTTTTTAAAAACTGGCCAGTTTGTGAATCCGTCTCTGTTTGGTTCTTCTTTCTTTCCCCATCAGGCCCCCTTGCCCTGGGTGGAGTGTGTGACCCCTTTATTTGTTCTTTCCCTGATTGTAACTTCAGTCTGATCAGGCCACATGAACTGTATTTTGAGTAAAAGACAAAGTAAACTTGAAAATAAGTGCTGGTATATTTGATTACTTATTCCACGCTATATATAATTTTGGTCATTATTCGCGCTGATATCTCCATTGGATGGATCCGGTTTTTCTAAAAGAAAAGGTTttagagatgaaaaaaaaatccattcatTTGATCCATAGAGGAAAGTGATTTTTAACACTACCCGATAGACATTTAAAGACAGGCCTGTTGTAAGGTTTGATTGAATATGACTTTGTTTAACCTGTCTGCTACATGAACTTTgagaaaaatataagaaaaactATATTACAGAAGAGAAAAATATATTAAGCACAGTTGCAGCAAAGTCTGTCAAACATGTTTTTAATTAAGTGATTGCTTGATGATTTTACCGgcaatattaatgataataattattataacctTTTTTTACCACGAAAAAAGCACATTAAGATTAAAAGATCTTTTACAAGAGTGTCCTGAACAAGATTATGCAGCATAGACCATGTTGAGGGATTTGAACAAAACCAATGGCCCCAACGTACGTATTTCAAATTCCCCAACGAATTATAATTTctgtagcttccgagaatccaaaacgagccacatattgataaataatgttatgctagccgttttaacattaagtCATGATTGAATCGCCTCTAGTTGAAGTTATGAACTAGTTTGATTAGCAgaaaatgtttatgggccaatgacatgaccacattgaaatggtctatacagcTCACAAGgggtttaacaaaaaaaaaggtcatgtcATGGGTTTGAGCACAATTTTTATACTCACTGGTAACCCttcacaataaggttgtattagttaatgcattgaataacatgaaaaaaacattaacaatacatttattacagtatttgttgatgaatattcagttgttcattgttaggtcacgttaactcacagtgcattaactaatggtaacAAGCATAAATATGGATTTTAAAAATTCATTAGTAAACGTTGAACTATGAATAATAAATCCGggacaagtattgttcataattaactcatgttagtaaatacatattgtaaagtgtcacaTTTCTTCTAAATTTTGTATACAAATATGGCCATTTTATAGCATTTTCATTTTTCTCAAAAGGACATTTGGTAAGAATAACAGAGGTAAGAAAGTTTGTTGTAGTTTGAAAAATCAAGCTTATTTtgccaaatatcaatgtcttaaAACATagggattaaattaatttttgtaCCTGATAATTGATATTAACATGTCTGAAAAGATGTCAGCATTGTTATTTTATGCcgaaaaaagatatttaaattaaaaacaacccAAATTACAACAATAGTTTCTGTAAATCTCTATTGGATTTACAAATGAATGGAAAAAATACTTCTGGAATCAGCCTGAAAAAAGTGAACACCTCTCAATTTgcattttgaatagtttattcaTCCAGTTACTTggacacttttattttttttaacacatcca
>TCONS_00007586
CTGAAAGGCGATGCAATTGCAATTGATGCATCATAAAACATCAGTTGGCCAGGCCATCTTCCAGACAACAGCGCGCTAAATGACATGAAAGCAACATTACAGCACGGTGCACGTCACTAAGGGGGACAGCACATAGCCTGCAGCCAAGTGGACAGCAATGGCACCGATAAGACCAAACACGAAACGCATCGAATTTgcggaagtgagcgggcgggtgGGGCCTCGACAGTAATGTGACCACAGACGCCGTTAGGATTGCGTGAAACGAAGCGTTATGTATGACCCTACAAAGACCCGTTGCGATTTTTAAGGCCGGACGCGAAATGAGACGAGGACGTGCGCAATGTTGAAGGAGCGACTGAAATAGAGTTTATATGCACTAATTGTCTGGCGCTGTGTGAGGGGGCTAACTAACACCAAGAGGATtaccatcatcaccatcatcacacAACCGAGATCTCATGACTGGAGCAATGTGAAACGCCGATATCGCTCATTCCTTCAGTATATTGAGGAATAATAATGAACAACGCGCAAGATATGTCTCCCGATTTTGTCTTGATGCGCCTGGTCTCCGCGGCCGAGGATGACCGCTTGGACGAGGAGAATGGGAATCTGTCGTCGGGCACTGGACTGACAGTGGCTATCAAGGGGAACTTTGAATGCACGCAGAATCACGGCATTATCTCGGCCGTGAACAAAGCTCCGCAGGCCAGCGGAACGGAGGCACCTGACGCGGGAGTGATGGCGACCAGACCTGCGCTGTCTGTGCCGCCGCCTCCTCTCCATTCAGCCGAGGCCCACGGGTACGATCTCACCCACCGAGGTGGAATGGGGCCTCAGCTGTTGGTATTCAGAAACATATCGAGAGACTCTGAAGGATTTTCCGAGAACAAGTCGGAGGATCAGCGCAGGGCTTTTGAGGACCAAGCGCTACTCGCTTCCGAGTCCGGCGCTGTGGACGCTCAGCATCCGCCTACATGGACGCTGCATCCACAGCTCAAACTGCCAGCGGTTGCTACGGATACGGATGGAGGCGAGCTCTGCCACCGGCATCGCTTGATCACAGACCAACAGGACTGGCCGCCGGTTGTGGAGCACAAAACGAGCTCGATGACAGTGCAGCGGCAGCTCCAGCTCCCCGAAGGTCCAGTTCTGGAGCTCGCGAGGAAATTCGGCGAGCTGGGAGTTGCTCCCGTACCCGAATTTCTGCTCAAGGATGGCGAGCTGCAGCACTGCTCCTGTCAAAGCGTGCTGGGCTCGGCGGGGATGCGGCAGGGAGAGGACCCGACCGAGACCAGCGATGCTTTGCTGGTGCTGGAGGGCCTCGGGTCAGAGGAGGTGAACGGCCTGGGCATCAACGCCTGTCAGAAGCCCGAGTCCCAGACCACGGAGCCCGGCGCGTTTGCGCTAAAGTGTTTCCCCTCGGTTCTGTCCGGGCAAGCTATGGGGGTGTCCGGGGGACTTTGCTCGCCGACGTGTTGCTTGTTGCGAGACTCTGTAAACAACAGGCCCCAGGCTCCCGCCGCTGACAAACTGATTCCCGAGGTGATTTCCCAAGCCGAACCCAGCCAGGAGACGCCATGCTCCAGCCAGGCGTCCACGCCGAAGGCCCGGAGTTCGAGCCGGGCGCATCTTTCCGCAGCGAGCGGGGGAGAGAAGACTCTAAAAGTACCAGGGAAATCCAGGAAGGGCTCGCTTAAAATCCGACTCAGTAAACTTTTCAGAACTAAAAGCTGTAGTGGCTCTAACAACCTTTTGGACAAAAGACCTTCAGTCACGTTCTCCATATCCTCTGCGGGAAGTTTAGTTGACATGTCTGGAGCTATCGGTGGAGAACAAGACACGAGCAGCCAACCTGGACTAACAAGGGCACAAAGTGCTTTCTCTGCAGCCTCTTTTACTCCAGTTTTCACAgGAGAGACGGTGTCGTTAGTTGATGTGGACATCTCACAGCGAGGAAGAAACTCTCCTCATCCTCCCACTCCTCCACCTCCCCCTCGACGGAGTCTCAGTCTGCTGGATGCTTTCTTCCGGGCACTTCCTCATTCAGCTGCATCACCAATGGAGAATCCAGCCCCTGCCAGACTAGCTCCGCCGCAAGTCATGTGCCCGCTAAGAGGGGCCGATTCCAGTAGCTTCACTGCCAGCCTGAGAGAGCTGGAGCGGtgtgGCTGGTATTGGGGGCCGATGAACTGGGAGGATGCTGAAATGAAGCTGAGAGGGAAGCCTGATGGCTCGTTTTTGGTGCGGGACAGTTCAGACCCACGATACATCCTCAGCCTCAGCTTTCGCTCACAGGGAGTCACACACCACACGCGTATGGAGCACTACAGAGGAACCTTCAGTTTATGGTGCCACCCTAAGTTTGAGGATCGCTGTCATTCTGTGGTGGAGTTCATCGAGCGAGCCATTATGCACTCAAAAAATGGGAAATTCCTCTACTTCCTACGTTCACGTGTACCTGGGTTGCCCCCCACCCCTGTACAGCTGCTTTATCCAGTCTCACGCTTCAGCAATGTAAAATCCCTCCAGCATCTGTGCCGTTTCTGCATCCGACAGCTCGTCCGCATAGATCACATCCAGGAGCTGCCTCTGCCCAAACCGCTCATTGTCTACTTGAGGAAGTTCTATTACTATGATCCAGAGGAAGAGATGTACCTGTCAATCAAAGGCATGCGCCAGGCAGCAGGAGTGGAACAGGAAGCAGAGTCTGAAACATAGCCAGCCGGATCGGTCCGTTTCACTAATTTCTATGTGTGGATATTGGATGGAACAGCGCATGGACACTTCCTGGTGCACAGCTCCCTGCCAGTCTTCCAGCAGACGCCAATGAACATCAGCCGACTGGCATCTCCTCTTTGACCAATATCGGACAGAGGGAGATCAGAGGAGTGCTGGAATACTGTCTATGTTGAGCAGGCAAATCAAATTCAGAGACTTTGACTTGATCGACAAAGGACTCGAAAGACTGCTAAAAGTGGActtcaaatattaaattaaataagatacGGACTGAGGACATTTGACTTGGGGTACTAGCAAACGCCTTCATCTGTAGGTTATATTACGCTGGAGTTTTTAAAAACTGGCCAGTTTGTGAATCCGTCTCTGTTTGGTTCTTCTTTCTTTCCCCATCAGGCCCCCTTGCCCTGGGTGGAGTGTGTGACCCCTTTATTTGTTCTTTCCCTGATTGTAACTTCAGTCTGATCAGGCCACATGAACTGTATTTTGAGTAAAAGACAAAGTAAACTTGAAAATAAGTGCTGGTATATTTGAT

Function

symbol description
socs7 Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within intracellular signal transduction; negative regulation of signal transduction; and regulation of growth. Predicted to be part of phosphatidylinositol 3-kinase complex. Orthologous to human SOCS7 (suppressor of cytokine signaling 7).

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0046935 1-phosphatidylinositol-3-kinase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-125 Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within intracellular signal transduction; negative regulation of signal transduction; and regulation of growth. Predicted to be part of phosphatidylinositol 3-kinase complex. Orthologous to human SOCS7 (suppressor of cytokine signaling 7).

Ensembl:

ensembl_id ENSDARG00000077018

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007585 False 4335 mRNA 0.46 10 12009735 12051283
TCONS_00007586 True 3280 mRNA 0.53 9 12011180 12051805

Neighbor

gene id symbol gene type direction distance location
XLOC_003967 sp2 coding downstream 1734 11983465 ~ 12008001 (-)
XLOC_003966 abcc10 coding downstream 44702 11911399 ~ 11965033 (-)
XLOC_003965 si:ch211-69b7.6 coding downstream 99510 11891580 ~ 11910225 (-)
XLOC_003964 wipf2a coding downstream 119734 11844123 ~ 11890001 (-)
XLOC_003963 cdc6 coding downstream 216969 11781973 ~ 11792766 (-)
XLOC_003969 mrpl45 coding upstream 44394 12096199 ~ 12104917 (-)
XLOC_003970 npepps coding upstream 56550 12108355 ~ 12158412 (-)
XLOC_003972 NA coding upstream 113918 12165723 ~ 12166007 (-)
XLOC_003975 NA coding upstream 134049 12185854 ~ 12186144 (-)
XLOC_003976 krt95 coding upstream 136315 12188120 ~ 12198914 (-)
XLOC_003954 BX324177.9 misc downstream 562250 11447189 ~ 11447485 (-)
XLOC_003953 BX324177.8 misc downstream 563750 11445689 ~ 11445985 (-)
XLOC_003952 BX324177.23 misc downstream 571548 11437891 ~ 11438187 (-)
XLOC_003951 BX324177.16 misc downstream 573992 11435447 ~ 11435743 (-)
XLOC_003950 BX324177.18 misc downstream 582561 11426878 ~ 11427174 (-)
XLOC_003971 BX469912.7 misc upstream 109853 12161658 ~ 12161955 (-)
XLOC_003973 BX469912.11 misc upstream 116197 12168002 ~ 12168298 (-)
XLOC_003974 BX469912.4 misc upstream 117556 12169361 ~ 12169654 (-)
XLOC_003979 BX469912.8 misc upstream 169085 12220890 ~ 12221186 (-)
XLOC_003983 FO904934.1 misc upstream 202055 12253860 ~ 12254156 (-)
XLOC_003962 CR848705.2 non-coding downstream 303599 11639483 ~ 11706136 (-)
XLOC_003960 NA non-coding downstream 407855 11594994 ~ 11601880 (-)
XLOC_003955 NA non-coding downstream 557800 11451660 ~ 11451935 (-)
XLOC_003946 NA non-coding downstream 604845 11404596 ~ 11404890 (-)
XLOC_003941 NA non-coding downstream 652548 11356893 ~ 11357187 (-)
XLOC_003977 NA non-coding upstream 161344 12213149 ~ 12213431 (-)
XLOC_003997 NA non-coding upstream 377578 12429383 ~ 12491279 (-)
XLOC_003998 NA non-coding upstream 378350 12430155 ~ 12465409 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000305_00091792_00117128 SOCS7, SP2 coding CI01000305 null 91647 ~ 117128 (+)