XLOC_003997


Basic Information

Item Value
gene id XLOC_003997
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12429383 ~ 12491279 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008771
TCAAAGTTAAAGAGAAGAACTGGATCTGTGTAAGTTTTAAATGTGACAGAAtgtgtgtctctgtctgtctggatCGCTCTGACTGTGATTTTGGTGTCACATTTAGGTTCAGCAACTGTCCGGAGTTGGTGGATGTTCTGTCCGAGCCTGATTAAAAGAGTGATAAACGGGTACATATTTATCTTgcattgtttgtgtttatttctgcACAATATTTCAGGAAAATATGTTTTACTACCCCAACAATTAACCCAGCATTTTATATAACTAAAACTATAGATTTCATCTGTCATTCATCATTGTACGTCTCCTTATAGACATGCCTGTTTTAATgttcagatgttttaaaatgtttgtacagACTCAGGCTGTCAAGCAGActgaaaatattaaatgataatttTAGTGTAAGCCATGAATGACAGTCTTTGCTTGTCACAAAACTGTGGATGTGTGGATATGGGCAGTTGTAAAATGACGAGTAGTAGGGAATATGTATGTATTGACATTAGATATTGCTCTGCACATTGCTGTTCATTCATGAAACATGACAGTAATTCTTGATATATTGTAAGTTTTTAGTTTTAGGATCATACAAAATCATATTCTCCTTCCTCAGATGCCGTAAAGTGAGTCCAGATGCTACAGACACAGAAAAAGGTGCAGCAATGGAGGAACACAGCAAGCACCTTCCAGGAAGAGCTGGAGAATATTAGAAATAAAGAct
>TCONS_00008772
CCCTGAGGACACTCCAGAGTAGCAGGTCTACATGTTCTGTTAAGAGACTGGATTCTGAGAGCGAGATCCTGTGAAGTGTTCATCAAAGCTGAAGAGAAGAACTGGATCTGTGTTCAGCAACTGTCCGGAGTTGGTGGATGTTCTGTCCGAGCCTGATTAAAAGAGTGATAAACGGTGAGTCCAGATGCTACAGACACAGAAAAAGGTGCAGCAATGGAGGAACACAGCAAGCACCTTCCAGGAAGAGCTGGAGAATATTAGAAATAAAGAct

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008771 False 727 lncRNA 0.36 1 12429383 12430109
TCONS_00008772 True 272 lncRNA 0.46 4 12429383 12491279

Neighbor

gene id symbol gene type direction distance location
XLOC_003996 si:dkey-27d5.9 coding downstream 11431 12416065 ~ 12417952 (-)
XLOC_003994 si:dkey-27d5.10 coding downstream 34701 12392715 ~ 12394682 (-)
XLOC_003993 zgc:174353 coding downstream 49842 12377621 ~ 12379541 (-)
XLOC_003992 zgc:174353 coding downstream 65261 12362231 ~ 12364122 (-)
XLOC_003990 si:dkey-27d5.14 coding downstream 78964 12348479 ~ 12350419 (-)
XLOC_004005 si:dkey-27d5.4 coding upstream 5901 12497180 ~ 12499116 (-)
XLOC_004007 si:dkey-27d5.3 coding upstream 18944 12510223 ~ 12512122 (-)
XLOC_004009 zgc:174354 coding upstream 37102 12528381 ~ 12530304 (-)
XLOC_004010 zgc:174354 coding upstream 55912 12547191 ~ 12549110 (-)
XLOC_004011 CABZ01022569.2 coding upstream 81027 12572306 ~ 12573680 (-)
XLOC_003995 BX000700.6 misc downstream 33569 12395518 ~ 12395814 (-)
XLOC_003991 BX000700.22 misc downstream 77828 12351259 ~ 12351555 (-)
XLOC_003988 LO017719.2 misc downstream 105457 12323630 ~ 12323926 (-)
XLOC_003985 CABZ01022564.3 misc downstream 139715 12289372 ~ 12289668 (-)
XLOC_003983 FO904934.1 misc downstream 175227 12253860 ~ 12254156 (-)
XLOC_004006 BX000700.27 misc upstream 8687 12499966 ~ 12500262 (-)
XLOC_004008 BX000700.19 misc upstream 21687 12512966 ~ 12513262 (-)
XLOC_004013 CABZ01022569.1 misc upstream 99720 12590999 ~ 12591296 (-)
XLOC_004015 CR450764.4 misc upstream 130239 12621518 ~ 12621767 (-)
XLOC_004019 CR450764.8 misc upstream 200116 12691395 ~ 12691691 (-)
XLOC_003977 NA non-coding downstream 215952 12213149 ~ 12213431 (-)
XLOC_003975 NA non-coding downstream 243239 12185854 ~ 12186144 (-)
XLOC_003972 NA non-coding downstream 263376 12165723 ~ 12166007 (-)
XLOC_003962 CR848705.2 non-coding downstream 723247 11639483 ~ 11706136 (-)
XLOC_003960 NA non-coding downstream 827503 11594994 ~ 11601880 (-)
XLOC_004024 CR450764.5 non-coding upstream 264864 12756143 ~ 12756275 (-)
XLOC_004029 BX530062.1 non-coding upstream 991392 13482671 ~ 13482787 (-)
XLOC_004032 CR555295.1 non-coding upstream 1307174 13798453 ~ 13800802 (-)
XLOC_004034 NA non-coding upstream 1656384 14147663 ~ 14148426 (-)
XLOC_004035 NA non-coding upstream 1817618 14308897 ~ 14311237 (-)

Expression


Co-expression Network