XLOC_004009 (zgc:174354)


Basic Information

Item Value
gene id XLOC_004009
gene name zgc:174354
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12528381 ~ 12530304 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007649
CAACGgttctttttgtgttgttttgaacttgCTCTGTCATTGGCATCTGATCTCGGCGTTCTTCGTGGCAACTGATTCCCagattattgatattattgattGTTGGATACATCGATTGATCGCCTGCTGCTCCCTTCATTCAGGTTTGACCTTTGTGATCACactgtgttttgtgtttagtATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCTGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAAAAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatttggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCATAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATATGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGTCATCCTTCTCCTGCCAGACCAAGCCgctgccctcctcttcctcagctGGTGCAGCATCTTCAGTCCAGGACGCCAGAGGGAAACGTTCCCGCTCCCCATCTCCACCAGAGACGCACGGCGACCAGAAGAGACCACGTCACTGAGAGACCTTCACCCAAGAGATCTGGAGCTGACGTGAGCACagtgtatatattgtacatagtttatgaataaaactgaataaagattATAGCAGCATAAA
>TCONS_00007650
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCTGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAAAAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatttggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCATAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGA

Function

symbol description
zgc:174354 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080218-8 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000115298

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007649 False 1019 mRNA 0.50 6 12528381 12530304
TCONS_00007650 True 525 mRNA 0.52 5 12528789 12530123

Neighbor

gene id symbol gene type direction distance location
XLOC_004007 si:dkey-27d5.3 coding downstream 16259 12510223 ~ 12512122 (-)
XLOC_004005 si:dkey-27d5.4 coding downstream 29265 12497180 ~ 12499116 (-)
XLOC_004004 si:dkey-27d5.5 coding downstream 45079 12481385 ~ 12483302 (-)
XLOC_004003 si:dkey-27d5.6 coding downstream 56375 12470089 ~ 12472006 (-)
XLOC_004002 NA coding downstream 63895 12463700 ~ 12464486 (-)
XLOC_004010 zgc:174354 coding upstream 16887 12547191 ~ 12549110 (-)
XLOC_004011 CABZ01022569.2 coding upstream 42002 12572306 ~ 12573680 (-)
XLOC_004012 zgc:91850 coding upstream 58330 12588634 ~ 12589948 (-)
XLOC_004014 CR450764.17 coding upstream 80272 12610576 ~ 12619789 (-)
XLOC_004016 CR450764.3 coding upstream 102091 12632395 ~ 12634017 (-)
XLOC_004008 BX000700.19 misc downstream 15119 12512966 ~ 12513262 (-)
XLOC_004006 BX000700.27 misc downstream 28119 12499966 ~ 12500262 (-)
XLOC_004000 BX000700.23 misc downstream 90001 12438084 ~ 12438380 (-)
XLOC_003995 BX000700.6 misc downstream 132567 12395518 ~ 12395814 (-)
XLOC_003991 BX000700.22 misc downstream 176826 12351259 ~ 12351555 (-)
XLOC_004013 CABZ01022569.1 misc upstream 60695 12590999 ~ 12591296 (-)
XLOC_004015 CR450764.4 misc upstream 91214 12621518 ~ 12621767 (-)
XLOC_004019 CR450764.8 misc upstream 161091 12691395 ~ 12691691 (-)
XLOC_004063 CR854846.1 misc upstream 3597078 16127382 ~ 16127678 (-)
XLOC_003997 NA non-coding downstream 37102 12429383 ~ 12491279 (-)
XLOC_003998 NA non-coding downstream 62972 12430155 ~ 12465409 (-)
XLOC_003977 NA non-coding downstream 314950 12213149 ~ 12213431 (-)
XLOC_003975 NA non-coding downstream 342237 12185854 ~ 12186144 (-)
XLOC_004024 CR450764.5 non-coding upstream 225839 12756143 ~ 12756275 (-)
XLOC_004029 BX530062.1 non-coding upstream 952367 13482671 ~ 13482787 (-)
XLOC_004032 CR555295.1 non-coding upstream 1268149 13798453 ~ 13800802 (-)
XLOC_004034 NA non-coding upstream 1617359 14147663 ~ 14148426 (-)
XLOC_004035 NA non-coding upstream 1778593 14308897 ~ 14311237 (-)

Expression


Co-expression Network