XLOC_004002


Basic Information

Item Value
gene id XLOC_004002
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12463700 ~ 12464486 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008774
ACTGCAGCAGGTCTACATGTTCTGTTAAGAGACTGGATTCTGAGAGCGAGATCCTGTGAAGTGTTTATCAAAGTTAAAAAGAAGAACTGGATCTGTGTAAGTTTTAAATGTGACAGAAtgtgtgtctctgtctgtctggatCGCTCTGACTGTGATTTTGGTGTCACATTTAGGTTCAGCAACTGTCCGGAGTTGGTGGATGTTCTGTCCGAGCCTGATTAAAAGAGTGATAAACGGGTACATATTTATCTTgcattgtttgtgtttatttctgcACAATATttcaggaaaatatattttactacCCCAACAATTAACCCagcattttatataattaaaactgTAGATTTCATCTGTCATTCATCATTGTACGTCTCCTTATAGACATGCCTGTTTTAATgttcagatgttttaaaatgtttgtacagACTCAGGCTGTCAAGCAGActgaaaatattaaatgataatttTAGTGTAAGCCATGAATGACAGTCTTTGCTTGTCACAAAACTGTGGATGTGTGGATATGGGCAGTTGTAAAATGATGAGTAGTAGGGAATATGTATGTATTGACATTAGATACTGCTCTGCACATTGCTGTTCATTCATGAAACATGACAGTAATTCTTGATATGTTGTAAGTTTTTAGTTTTAAGATGATACAAAATCATATTCTCCTTCCTCAGATGCTGTGAAGTGAGTCCAGATGCTACAGACACAGAAAAAGATGCAGCAATGGAGGAACACAGCAAGCACCTTCCAGGAAGAGCTGGAGAATAGTAGAAAT

Function

GO:

id name namespace
GO:0042572 retinol metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008774 True 787 lncRNA 0.37 1 12463700 12464486

Neighbor

gene id symbol gene type direction distance location
XLOC_004001 zgc:174354 coding downstream 11218 12450564 ~ 12452482 (-)
XLOC_003999 zgc:174355 coding downstream 26466 12435301 ~ 12437234 (-)
XLOC_003996 si:dkey-27d5.9 coding downstream 45748 12416065 ~ 12417952 (-)
XLOC_003994 si:dkey-27d5.10 coding downstream 69018 12392715 ~ 12394682 (-)
XLOC_003993 zgc:174353 coding downstream 84159 12377621 ~ 12379541 (-)
XLOC_004003 si:dkey-27d5.6 coding upstream 5603 12470089 ~ 12472006 (-)
XLOC_004004 si:dkey-27d5.5 coding upstream 16899 12481385 ~ 12483302 (-)
XLOC_004005 si:dkey-27d5.4 coding upstream 32694 12497180 ~ 12499116 (-)
XLOC_004007 si:dkey-27d5.3 coding upstream 45737 12510223 ~ 12512122 (-)
XLOC_004009 zgc:174354 coding upstream 63895 12528381 ~ 12530304 (-)
XLOC_004000 BX000700.23 misc downstream 25320 12438084 ~ 12438380 (-)
XLOC_003995 BX000700.6 misc downstream 67886 12395518 ~ 12395814 (-)
XLOC_003991 BX000700.22 misc downstream 112145 12351259 ~ 12351555 (-)
XLOC_003988 LO017719.2 misc downstream 139774 12323630 ~ 12323926 (-)
XLOC_003985 CABZ01022564.3 misc downstream 174032 12289372 ~ 12289668 (-)
XLOC_004006 BX000700.27 misc upstream 35480 12499966 ~ 12500262 (-)
XLOC_004008 BX000700.19 misc upstream 48480 12512966 ~ 12513262 (-)
XLOC_004013 CABZ01022569.1 misc upstream 126513 12590999 ~ 12591296 (-)
XLOC_004015 CR450764.4 misc upstream 157032 12621518 ~ 12621767 (-)
XLOC_004019 CR450764.8 misc upstream 226909 12691395 ~ 12691691 (-)
XLOC_003977 NA non-coding downstream 250269 12213149 ~ 12213431 (-)
XLOC_003975 NA non-coding downstream 277556 12185854 ~ 12186144 (-)
XLOC_003972 NA non-coding downstream 297693 12165723 ~ 12166007 (-)
XLOC_003962 CR848705.2 non-coding downstream 757564 11639483 ~ 11706136 (-)
XLOC_003960 NA non-coding downstream 861820 11594994 ~ 11601880 (-)
XLOC_004024 CR450764.5 non-coding upstream 291657 12756143 ~ 12756275 (-)
XLOC_004029 BX530062.1 non-coding upstream 1018185 13482671 ~ 13482787 (-)
XLOC_004032 CR555295.1 non-coding upstream 1333967 13798453 ~ 13800802 (-)
XLOC_004034 NA non-coding upstream 1683177 14147663 ~ 14148426 (-)
XLOC_004035 NA non-coding upstream 1844411 14308897 ~ 14311237 (-)

Expression


Co-expression Network