XLOC_004004 (si:dkey-27d5.5)


Basic Information

Item Value
gene id XLOC_004004
gene name si:dkey-27d5.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12481385 ~ 12483302 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007641
CAACGGTtctctttgtgttgttttgaactccGCTCTGTCATTGGCATCTGATCTGGGCGTCCTTCGTGGCAACTGATTCCCagattattgatattattgattGTTGGATACATCGATTGATCGCCTGCTGCTCCCTTCATTCAGGTTTGACCCTTGTTATCACACTGTGTTTTGTGTTCAGTATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCGGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCTAAAAACACATCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTTTCAAACAGGTGATTCTTTACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCACAAGCGCATCAggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCAAAAGGGTGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCGTCCTTCTCCTGCCAGACCAAGCCgctgccctcctcttcctcagctGGTGCAGCATCTTCAGTCCAGGACGCCAGAGGGAAACGTTCCCGCTCCCCATCTCCACCAGAGACGCACGGCGACCAGAAGAGACCACGTCACTGAGAGACCTTCACCCAAGAGACCTGGAGCCGACGTGAGCACagtgtatatattgtacatagtttatgaataaaactgaataaagattATAGCAGCATAAA
>TCONS_00007642
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCGGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCTAAAAACACATCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTTTCAAACAGGTGATTCTTTACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCACAAGCGCATCAggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCAAAAGGGTGTCATGA

Function

symbol description
si:dkey-27d5.5 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-32 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000113484

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007641 False 1020 mRNA 0.50 6 12481385 12483302
TCONS_00007642 True 525 mRNA 0.52 5 12481793 12483120

Neighbor

gene id symbol gene type direction distance location
XLOC_004003 si:dkey-27d5.6 coding downstream 9379 12470089 ~ 12472006 (-)
XLOC_003998 NA coding downstream 15976 12430155 ~ 12465409 (-)
XLOC_004002 NA coding downstream 16899 12463700 ~ 12464486 (-)
XLOC_004001 zgc:174354 coding downstream 28903 12450564 ~ 12452482 (-)
XLOC_003999 zgc:174355 coding downstream 44151 12435301 ~ 12437234 (-)
XLOC_004005 si:dkey-27d5.4 coding upstream 13878 12497180 ~ 12499116 (-)
XLOC_004007 si:dkey-27d5.3 coding upstream 26921 12510223 ~ 12512122 (-)
XLOC_004009 zgc:174354 coding upstream 45079 12528381 ~ 12530304 (-)
XLOC_004010 zgc:174354 coding upstream 63889 12547191 ~ 12549110 (-)
XLOC_004011 CABZ01022569.2 coding upstream 89004 12572306 ~ 12573680 (-)
XLOC_004000 BX000700.23 misc downstream 43005 12438084 ~ 12438380 (-)
XLOC_003995 BX000700.6 misc downstream 85571 12395518 ~ 12395814 (-)
XLOC_003991 BX000700.22 misc downstream 129830 12351259 ~ 12351555 (-)
XLOC_003988 LO017719.2 misc downstream 157459 12323630 ~ 12323926 (-)
XLOC_003985 CABZ01022564.3 misc downstream 191717 12289372 ~ 12289668 (-)
XLOC_004006 BX000700.27 misc upstream 16664 12499966 ~ 12500262 (-)
XLOC_004008 BX000700.19 misc upstream 29664 12512966 ~ 12513262 (-)
XLOC_004013 CABZ01022569.1 misc upstream 107697 12590999 ~ 12591296 (-)
XLOC_004015 CR450764.4 misc upstream 138216 12621518 ~ 12621767 (-)
XLOC_004019 CR450764.8 misc upstream 208093 12691395 ~ 12691691 (-)
XLOC_003977 NA non-coding downstream 267954 12213149 ~ 12213431 (-)
XLOC_003975 NA non-coding downstream 295241 12185854 ~ 12186144 (-)
XLOC_003972 NA non-coding downstream 315378 12165723 ~ 12166007 (-)
XLOC_004024 CR450764.5 non-coding upstream 272841 12756143 ~ 12756275 (-)
XLOC_004029 BX530062.1 non-coding upstream 999369 13482671 ~ 13482787 (-)
XLOC_004032 CR555295.1 non-coding upstream 1315151 13798453 ~ 13800802 (-)
XLOC_004034 NA non-coding upstream 1664361 14147663 ~ 14148426 (-)
XLOC_004035 NA non-coding upstream 1825595 14308897 ~ 14311237 (-)

Expression


Co-expression Network