XLOC_003972


Basic Information

Item Value
gene id XLOC_003972
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12165723 ~ 12166007 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007591
GCCGGGTTCAGTGGCGCGCGCCTGTAATCCAAGCTACTGGGAGGCTGAGACTATGGAttgcttgagctcagggcttctggGCTGAAGTGGACTATGTTGATCAGGTGTCCTCACATTGGATGCTCCTGGGGGAGCTTAGGACCATCAGGTTGTCTAGGGAGGGGTGAACCAGCCCAGGTTTGAGACGGAGCAGGTCAAATCCTCTGTGCCGATCAGTAGTGGGATTGCAGATGTAAATAGACACTGCAGTGCAGCCTGAGATGCAGATTTCTGGATTTGTTGTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007591 True 285 lncRNA 0.53 1 12165723 12166007

Neighbor

gene id symbol gene type direction distance location
XLOC_003970 npepps coding downstream 7311 12108355 ~ 12158412 (-)
XLOC_003969 mrpl45 coding downstream 60806 12096199 ~ 12104917 (-)
XLOC_003968 socs7 coding downstream 113918 12009735 ~ 12051805 (-)
XLOC_003967 sp2 coding downstream 157722 11983465 ~ 12008001 (-)
XLOC_003966 abcc10 coding downstream 200690 11911399 ~ 11965033 (-)
XLOC_003975 NA coding upstream 19847 12185854 ~ 12186144 (-)
XLOC_003976 krt95 coding upstream 22113 12188120 ~ 12198914 (-)
XLOC_003977 NA coding upstream 47142 12213149 ~ 12213431 (-)
XLOC_003978 si:ch211-156l18.6 coding upstream 52099 12218106 ~ 12220002 (-)
XLOC_003980 zgc:174357 coding upstream 63823 12229830 ~ 12232929 (-)
XLOC_003971 BX469912.7 misc downstream 3768 12161658 ~ 12161955 (-)
XLOC_003954 BX324177.9 misc downstream 718238 11447189 ~ 11447485 (-)
XLOC_003953 BX324177.8 misc downstream 719738 11445689 ~ 11445985 (-)
XLOC_003952 BX324177.23 misc downstream 727536 11437891 ~ 11438187 (-)
XLOC_003951 BX324177.16 misc downstream 729980 11435447 ~ 11435743 (-)
XLOC_003973 BX469912.11 misc upstream 1995 12168002 ~ 12168298 (-)
XLOC_003974 BX469912.4 misc upstream 3354 12169361 ~ 12169654 (-)
XLOC_003979 BX469912.8 misc upstream 54883 12220890 ~ 12221186 (-)
XLOC_003983 FO904934.1 misc upstream 87853 12253860 ~ 12254156 (-)
XLOC_003985 CABZ01022564.3 misc upstream 123365 12289372 ~ 12289668 (-)
XLOC_003962 CR848705.2 non-coding downstream 459587 11639483 ~ 11706136 (-)
XLOC_003960 NA non-coding downstream 563843 11594994 ~ 11601880 (-)
XLOC_003955 NA non-coding downstream 713788 11451660 ~ 11451935 (-)
XLOC_003946 NA non-coding downstream 760833 11404596 ~ 11404890 (-)
XLOC_003941 NA non-coding downstream 808536 11356893 ~ 11357187 (-)
XLOC_003997 NA non-coding upstream 263376 12429383 ~ 12491279 (-)
XLOC_003998 NA non-coding upstream 264148 12430155 ~ 12465409 (-)
XLOC_004002 NA non-coding upstream 297693 12463700 ~ 12464486 (-)

Expression


Co-expression Network