XLOC_003980 (zgc:174357)


Basic Information

Item Value
gene id XLOC_003980
gene name zgc:174357
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12229830 ~ 12232929 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007606
GGCATCTGATCTCGGCGTCCTTCGTGGCTACTGATTCCCAGATTATTGATTGTTGGATACATCGATTGATCGTCTGCTTCTCCCATCATTCAGGTTTGATTCTTGTTATCACACTGTGGTTTGTATTCAGTATGTCTTGTGTTCATTACAGGTTTCAGAGTCGCCTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGCGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGACGATGATGCTCTCATCCCCAAAAACATGTCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCATCAAACAGAAGATTTGTTGGCCATCAAGCTGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctgaaagcggtgatgtaccagtccagtctgtgctactactccagcaggtgagcgttcagacactgacaggtttgGTTTGTGAGAAATGTTAAAGCTGATTCTCATGGTTCTGATGTTCATCAGTGAGGCCATGACACTGCTTGGGCTTCTTCCACCCAACTATGTCTGCTTTCACTGTGGGATCCCAGGACACCACATTAGGCACTGCCCCTCTAaaggGGTAACTGGGTTTTCTAAGCTTATGGTTGCTGTGAACTTGAGCTCTTGTCTCCATCAGTCAGATTGTTTGCTCTGTCGTTTGACTGTCACTCATGAattcacagggcagcagctctgctccGCACAAGCGCATCAggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGTCATCCTTCTCCTGCCAGACCAAGCCGCTGCCCTTCTCTTCCTCAGCTGGTGCAGCATCTTCAGTCCAGGACGCCAGAGGGAAACGTTCCCGCTCCCCATCTCCACCAGAGACGCACGGAGACCAGAAGAGACCACGTCACTGAGAAACCTTCACCCAAGAGACCTGGAGCCGACGTGAGCACagtgtatatattgtacatagtttatgaataaaactgaataaagattATAGCAGCA
>TCONS_00007607
tttttgtgttgttttgaacttcGCTCATTGGCATCTGATCTCGGCGTCCTTCGTGGCTACTGATTCCCAGATTATTGATTGTTGGATACATCGATTGATCGTCTGCTTCTCCCATCATTCAGGTTTGATTCTTGTTATCACACTGTGGTTTGTATTCAGTATGTCTTGTGTTCATTACAGGTTTCAGAGTCGCCTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGCGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGACGATGATGCTCTCATCCCCAAAAACATGTCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCATCAAACAGAAGATTTGTTGGCCATCAAGCTGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctgaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCACAAGCGCATCAggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGTCATCCTTCTCCTGCCAGACCAAGCCGCTGCCCTTCTCTTCCTCAGCTGGTGCAGCATCTTCAGTCCAGGACGCCAGAGGGAAACGTTCCCGCTCCCCATCTCCACCAGAGACGCACGGAGACCAGAAGAGACCACGTCACTGAGAAACCTTCACCCAAGAGACCTGGAGCCGACGTGAGCACagtgtatatattgtacatagtttatgaataaaactgaataaagattATAGCAGCA
>TCONS_00007608
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGCCTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGCGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGACGATGATGCTCTCATCCCCAAAAACATGTCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCATCAAACAGAAGATTTGTTGGCCATCAAGCTGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctgaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCACAAGCGCATCAggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGA

Function

symbol description
zgc:174357 Predicted to enable nucleic acid binding activity; ubiquitin protein ligase activity; and zinc ion binding activity. Predicted to act upstream of or within mRNA processing and protein ubiquitination. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-122 Predicted to enable nucleic acid binding activity; ubiquitin protein ligase activity; and zinc ion binding activity. Predicted to act upstream of or within mRNA processing and protein ubiquitination. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000110460

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007606 False 1241 nonsense_mediated_decay 0.50 6 12229830 12232900
TCONS_00007607 False 994 mRNA 0.51 6 12229830 12232929
TCONS_00007608 True 525 mRNA 0.53 5 12230234 12232769

Neighbor

gene id symbol gene type direction distance location
XLOC_003978 si:ch211-156l18.6 coding downstream 9828 12218106 ~ 12220002 (-)
XLOC_003977 NA coding downstream 16399 12213149 ~ 12213431 (-)
XLOC_003976 krt95 coding downstream 30916 12188120 ~ 12198914 (-)
XLOC_003975 NA coding downstream 43686 12185854 ~ 12186144 (-)
XLOC_003972 NA coding downstream 63823 12165723 ~ 12166007 (-)
XLOC_003981 zgc:174354 coding upstream 9007 12241936 ~ 12243295 (-)
XLOC_003982 si:ch211-156l18.4 coding upstream 18911 12251840 ~ 12252838 (-)
XLOC_003984 zgc:174356 coding upstream 54011 12286940 ~ 12288326 (-)
XLOC_003986 CABZ01022564.2 coding upstream 67650 12300579 ~ 12301939 (-)
XLOC_003987 zgc:174355 coding upstream 88416 12321345 ~ 12322685 (-)
XLOC_003979 BX469912.8 misc downstream 8644 12220890 ~ 12221186 (-)
XLOC_003974 BX469912.4 misc downstream 60176 12169361 ~ 12169654 (-)
XLOC_003973 BX469912.11 misc downstream 61532 12168002 ~ 12168298 (-)
XLOC_003971 BX469912.7 misc downstream 67875 12161658 ~ 12161955 (-)
XLOC_003954 BX324177.9 misc downstream 782345 11447189 ~ 11447485 (-)
XLOC_003983 FO904934.1 misc upstream 20931 12253860 ~ 12254156 (-)
XLOC_003985 CABZ01022564.3 misc upstream 56443 12289372 ~ 12289668 (-)
XLOC_003988 LO017719.2 misc upstream 90701 12323630 ~ 12323926 (-)
XLOC_003991 BX000700.22 misc upstream 118330 12351259 ~ 12351555 (-)
XLOC_003995 BX000700.6 misc upstream 162589 12395518 ~ 12395814 (-)
XLOC_003962 CR848705.2 non-coding downstream 523694 11639483 ~ 11706136 (-)
XLOC_003960 NA non-coding downstream 627950 11594994 ~ 11601880 (-)
XLOC_003997 NA non-coding upstream 196454 12429383 ~ 12491279 (-)
XLOC_003998 NA non-coding upstream 197226 12430155 ~ 12465409 (-)
XLOC_004002 NA non-coding upstream 230771 12463700 ~ 12464486 (-)
XLOC_004024 CR450764.5 non-coding upstream 523214 12756143 ~ 12756275 (-)
XLOC_004029 BX530062.1 non-coding upstream 1249742 13482671 ~ 13482787 (-)

Expression


Co-expression Network