XLOC_003987 (zgc:174355)


Basic Information

Item Value
gene id XLOC_003987
gene name zgc:174355
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12321345 ~ 12322685 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007615
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCTAAAAACACATCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCTTAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGA

Function

symbol description
zgc:174355 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human RBBP6 (RB binding protein 6, ubiquitin ligase).

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080214-3 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human RBBP6 (RB binding protein 6, ubiquitin ligase).

Ensembl:

ensembl_id ENSDARG00000114105

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007615 True 525 mRNA 0.52 5 12321345 12322685

Neighbor

gene id symbol gene type direction distance location
XLOC_003986 CABZ01022564.2 coding downstream 19406 12300579 ~ 12301939 (-)
XLOC_003984 zgc:174356 coding downstream 33019 12286940 ~ 12288326 (-)
XLOC_003982 si:ch211-156l18.4 coding downstream 68507 12251840 ~ 12252838 (-)
XLOC_003981 zgc:174354 coding downstream 78050 12241936 ~ 12243295 (-)
XLOC_003980 zgc:174357 coding downstream 88416 12229830 ~ 12232929 (-)
XLOC_003989 zgc:91850 coding upstream 9941 12332626 ~ 12334546 (-)
XLOC_003990 si:dkey-27d5.14 coding upstream 25794 12348479 ~ 12350419 (-)
XLOC_003992 zgc:174353 coding upstream 39546 12362231 ~ 12364122 (-)
XLOC_003993 zgc:174353 coding upstream 54936 12377621 ~ 12379541 (-)
XLOC_003994 si:dkey-27d5.10 coding upstream 70030 12392715 ~ 12394682 (-)
XLOC_003985 CABZ01022564.3 misc downstream 31677 12289372 ~ 12289668 (-)
XLOC_003983 FO904934.1 misc downstream 67189 12253860 ~ 12254156 (-)
XLOC_003979 BX469912.8 misc downstream 100159 12220890 ~ 12221186 (-)
XLOC_003974 BX469912.4 misc downstream 151691 12169361 ~ 12169654 (-)
XLOC_003973 BX469912.11 misc downstream 153047 12168002 ~ 12168298 (-)
XLOC_003988 LO017719.2 misc upstream 945 12323630 ~ 12323926 (-)
XLOC_003991 BX000700.22 misc upstream 28574 12351259 ~ 12351555 (-)
XLOC_003995 BX000700.6 misc upstream 72833 12395518 ~ 12395814 (-)
XLOC_004000 BX000700.23 misc upstream 115399 12438084 ~ 12438380 (-)
XLOC_004006 BX000700.27 misc upstream 177281 12499966 ~ 12500262 (-)
XLOC_003977 NA non-coding downstream 107914 12213149 ~ 12213431 (-)
XLOC_003975 NA non-coding downstream 135201 12185854 ~ 12186144 (-)
XLOC_003972 NA non-coding downstream 155338 12165723 ~ 12166007 (-)
XLOC_003962 CR848705.2 non-coding downstream 615209 11639483 ~ 11706136 (-)
XLOC_003960 NA non-coding downstream 719465 11594994 ~ 11601880 (-)
XLOC_003997 NA non-coding upstream 106698 12429383 ~ 12491279 (-)
XLOC_003998 NA non-coding upstream 107470 12430155 ~ 12465409 (-)
XLOC_004002 NA non-coding upstream 141015 12463700 ~ 12464486 (-)
XLOC_004024 CR450764.5 non-coding upstream 433458 12756143 ~ 12756275 (-)
XLOC_004029 BX530062.1 non-coding upstream 1159986 13482671 ~ 13482787 (-)

Expression


Co-expression Network