XLOC_003982 (si:ch211-156l18.4)


Basic Information

Item Value
gene id XLOC_003982
gene name si:ch211-156l18.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12251840 ~ 12252838 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007610
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGACAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCTAAAAACACATCGGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGATTATCAGCCAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGGAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcaggtga

Function

symbol description
si:ch211-156l18.4 Predicted to enable ubiquitin protein ligase activity and zinc ion binding activity. Predicted to act upstream of or within mRNA processing and protein ubiquitination. Predicted to be located in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000116455

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007610 True 429 mRNA 0.50 4 12251840 12252838

Neighbor

gene id symbol gene type direction distance location
XLOC_003981 zgc:174354 coding downstream 8545 12241936 ~ 12243295 (-)
XLOC_003980 zgc:174357 coding downstream 18911 12229830 ~ 12232929 (-)
XLOC_003978 si:ch211-156l18.6 coding downstream 31838 12218106 ~ 12220002 (-)
XLOC_003977 NA coding downstream 38409 12213149 ~ 12213431 (-)
XLOC_003976 krt95 coding downstream 52926 12188120 ~ 12198914 (-)
XLOC_003984 zgc:174356 coding upstream 34102 12286940 ~ 12288326 (-)
XLOC_003986 CABZ01022564.2 coding upstream 47741 12300579 ~ 12301939 (-)
XLOC_003987 zgc:174355 coding upstream 68507 12321345 ~ 12322685 (-)
XLOC_003989 zgc:91850 coding upstream 79788 12332626 ~ 12334546 (-)
XLOC_003990 si:dkey-27d5.14 coding upstream 95641 12348479 ~ 12350419 (-)
XLOC_003979 BX469912.8 misc downstream 30654 12220890 ~ 12221186 (-)
XLOC_003974 BX469912.4 misc downstream 82186 12169361 ~ 12169654 (-)
XLOC_003973 BX469912.11 misc downstream 83542 12168002 ~ 12168298 (-)
XLOC_003971 BX469912.7 misc downstream 89885 12161658 ~ 12161955 (-)
XLOC_003954 BX324177.9 misc downstream 804355 11447189 ~ 11447485 (-)
XLOC_003983 FO904934.1 misc upstream 1022 12253860 ~ 12254156 (-)
XLOC_003985 CABZ01022564.3 misc upstream 36534 12289372 ~ 12289668 (-)
XLOC_003988 LO017719.2 misc upstream 70792 12323630 ~ 12323926 (-)
XLOC_003991 BX000700.22 misc upstream 98421 12351259 ~ 12351555 (-)
XLOC_003995 BX000700.6 misc upstream 142680 12395518 ~ 12395814 (-)
XLOC_003975 NA non-coding downstream 65696 12185854 ~ 12186144 (-)
XLOC_003972 NA non-coding downstream 85833 12165723 ~ 12166007 (-)
XLOC_003962 CR848705.2 non-coding downstream 545704 11639483 ~ 11706136 (-)
XLOC_003960 NA non-coding downstream 649960 11594994 ~ 11601880 (-)
XLOC_003997 NA non-coding upstream 176545 12429383 ~ 12491279 (-)
XLOC_003998 NA non-coding upstream 177317 12430155 ~ 12465409 (-)
XLOC_004002 NA non-coding upstream 210862 12463700 ~ 12464486 (-)
XLOC_004024 CR450764.5 non-coding upstream 503305 12756143 ~ 12756275 (-)
XLOC_004029 BX530062.1 non-coding upstream 1229833 13482671 ~ 13482787 (-)

Expression


Co-expression Network