XLOC_003984 (zgc:174356)


Basic Information

Item Value
gene id XLOC_003984
gene name zgc:174356
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12286940 ~ 12288326 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007612
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTAAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACGTCGGTCATCATCAGACGGGTCCCTGCAGCTGGACTGAAGTCATCAAACAGAAGATTTGTTGGacatcaagctGGATTATCAGCCAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagGGTAGCAGCTCTGCTTCGCATAAGCGCATCAggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGA

Function

symbol description
zgc:174356 Predicted to enable transmembrane transporter activity; ubiquitin protein ligase activity; and zinc ion binding activity. Predicted to act upstream of or within mRNA processing; protein ubiquitination; and transmembrane transport. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0055085 transmembrane transport biological_process
GO:0016567 protein ubiquitination biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080215-21 Predicted to enable transmembrane transporter activity; ubiquitin protein ligase activity; and zinc ion binding activity. Predicted to act upstream of or within mRNA processing; protein ubiquitination; and transmembrane transport. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000116818

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007612 True 525 mRNA 0.51 5 12286940 12288326

Neighbor

gene id symbol gene type direction distance location
XLOC_003982 si:ch211-156l18.4 coding downstream 34102 12251840 ~ 12252838 (-)
XLOC_003981 zgc:174354 coding downstream 43645 12241936 ~ 12243295 (-)
XLOC_003980 zgc:174357 coding downstream 54011 12229830 ~ 12232929 (-)
XLOC_003978 si:ch211-156l18.6 coding downstream 66938 12218106 ~ 12220002 (-)
XLOC_003977 NA coding downstream 73509 12213149 ~ 12213431 (-)
XLOC_003986 CABZ01022564.2 coding upstream 12253 12300579 ~ 12301939 (-)
XLOC_003987 zgc:174355 coding upstream 33019 12321345 ~ 12322685 (-)
XLOC_003989 zgc:91850 coding upstream 44300 12332626 ~ 12334546 (-)
XLOC_003990 si:dkey-27d5.14 coding upstream 60153 12348479 ~ 12350419 (-)
XLOC_003992 zgc:174353 coding upstream 73905 12362231 ~ 12364122 (-)
XLOC_003983 FO904934.1 misc downstream 32784 12253860 ~ 12254156 (-)
XLOC_003979 BX469912.8 misc downstream 65754 12220890 ~ 12221186 (-)
XLOC_003974 BX469912.4 misc downstream 117286 12169361 ~ 12169654 (-)
XLOC_003973 BX469912.11 misc downstream 118642 12168002 ~ 12168298 (-)
XLOC_003971 BX469912.7 misc downstream 124985 12161658 ~ 12161955 (-)
XLOC_003985 CABZ01022564.3 misc upstream 1046 12289372 ~ 12289668 (-)
XLOC_003988 LO017719.2 misc upstream 35304 12323630 ~ 12323926 (-)
XLOC_003991 BX000700.22 misc upstream 62933 12351259 ~ 12351555 (-)
XLOC_003995 BX000700.6 misc upstream 107192 12395518 ~ 12395814 (-)
XLOC_004000 BX000700.23 misc upstream 149758 12438084 ~ 12438380 (-)
XLOC_003975 NA non-coding downstream 100796 12185854 ~ 12186144 (-)
XLOC_003972 NA non-coding downstream 120933 12165723 ~ 12166007 (-)
XLOC_003962 CR848705.2 non-coding downstream 580804 11639483 ~ 11706136 (-)
XLOC_003960 NA non-coding downstream 685060 11594994 ~ 11601880 (-)
XLOC_003997 NA non-coding upstream 141057 12429383 ~ 12491279 (-)
XLOC_003998 NA non-coding upstream 141829 12430155 ~ 12465409 (-)
XLOC_004002 NA non-coding upstream 175374 12463700 ~ 12464486 (-)
XLOC_004024 CR450764.5 non-coding upstream 467817 12756143 ~ 12756275 (-)
XLOC_004029 BX530062.1 non-coding upstream 1194345 13482671 ~ 13482787 (-)

Expression


Co-expression Network