XLOC_003990 (si:dkey-27d5.14)


Basic Information

Item Value
gene id XLOC_003990
gene name si:dkey-27d5.14
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12348479 ~ 12350419 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007619
CAACGgttctttttgtgttgttttgaactccGCTCTGTCATTGGCATCTGATCTCGGCGTCCTTCGTGGCAACTGATTCCCagattattgatattattgattGTTGGATAAATCGATTGATCGTCTGCTTTTTCCATCATTCAGGTTTGACCCTTGTTATCACAATGTGGTTTGTGTTCAGTATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTAAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGAATACACAGATGATGATGCTCTCATCCCTAAAAACACATCGGTCATCATCAGACGGGTCCCTGCTGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgaGAATCTGGCTGAGGCAAAGGCATCAGAGGAGGACAAGCTAAAAGCGGCGATGTACCAGTCCAGTCTGTGCTACTACTCCAGCAGggcagcagctctgctccGCTTAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGAAGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCTTCCTTCTGCCAGACCAAGCCgctgccctcctcttcctcagctGGTGCGGCATCTTCAGTCCAGGACGCCAGAAGGAAACGTTCCCGCTCCCCATCTCCACCAGAGACGCACGGAGACCAGAAGAGACCACGTCACTGAGAGACCTTCACCCAAGAGACCTGGAGCCGACGTGAGCACagtgtatatattgtacatagtttatgaataaaactgaataaagattATAGCAGCATAAA
>TCONS_00007620
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTAAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGAATACACAGATGATGATGCTCTCATCCCTAAAAACACATCGGTCATCATCAGACGGGTCCCTGCTGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgaGAATCTGGCTGAGGCAAAGGCATCAGAGGAGGACAAGCTAAAAGCGGCGATGTACCAGTCCAGTCTGTGCTACTACTCCAGCAGggcagcagctctgctccGCTTAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGAAGACCCAAACCGAAAGGGAGTCATGA

Function

symbol description
si:dkey-27d5.14 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-38 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000110939

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007619 False 1017 mRNA 0.50 6 12348479 12350419
TCONS_00007620 True 525 mRNA 0.52 5 12348884 12350237

Neighbor

gene id symbol gene type direction distance location
XLOC_003989 zgc:91850 coding downstream 13933 12332626 ~ 12334546 (-)
XLOC_003987 zgc:174355 coding downstream 25794 12321345 ~ 12322685 (-)
XLOC_003986 CABZ01022564.2 coding downstream 46540 12300579 ~ 12301939 (-)
XLOC_003984 zgc:174356 coding downstream 60153 12286940 ~ 12288326 (-)
XLOC_003982 si:ch211-156l18.4 coding downstream 95641 12251840 ~ 12252838 (-)
XLOC_003992 zgc:174353 coding upstream 11812 12362231 ~ 12364122 (-)
XLOC_003993 zgc:174353 coding upstream 27202 12377621 ~ 12379541 (-)
XLOC_003994 si:dkey-27d5.10 coding upstream 42296 12392715 ~ 12394682 (-)
XLOC_003996 si:dkey-27d5.9 coding upstream 65646 12416065 ~ 12417952 (-)
XLOC_003997 NA coding upstream 78964 12429383 ~ 12491279 (-)
XLOC_003988 LO017719.2 misc downstream 24553 12323630 ~ 12323926 (-)
XLOC_003985 CABZ01022564.3 misc downstream 58811 12289372 ~ 12289668 (-)
XLOC_003983 FO904934.1 misc downstream 94323 12253860 ~ 12254156 (-)
XLOC_003979 BX469912.8 misc downstream 127293 12220890 ~ 12221186 (-)
XLOC_003974 BX469912.4 misc downstream 178825 12169361 ~ 12169654 (-)
XLOC_003991 BX000700.22 misc upstream 840 12351259 ~ 12351555 (-)
XLOC_003995 BX000700.6 misc upstream 45099 12395518 ~ 12395814 (-)
XLOC_004000 BX000700.23 misc upstream 87665 12438084 ~ 12438380 (-)
XLOC_004006 BX000700.27 misc upstream 149547 12499966 ~ 12500262 (-)
XLOC_004008 BX000700.19 misc upstream 162547 12512966 ~ 12513262 (-)
XLOC_003977 NA non-coding downstream 135048 12213149 ~ 12213431 (-)
XLOC_003975 NA non-coding downstream 162335 12185854 ~ 12186144 (-)
XLOC_003972 NA non-coding downstream 182472 12165723 ~ 12166007 (-)
XLOC_003962 CR848705.2 non-coding downstream 642343 11639483 ~ 11706136 (-)
XLOC_003960 NA non-coding downstream 746599 11594994 ~ 11601880 (-)
XLOC_003998 NA non-coding upstream 79736 12430155 ~ 12465409 (-)
XLOC_004002 NA non-coding upstream 113281 12463700 ~ 12464486 (-)
XLOC_004024 CR450764.5 non-coding upstream 405724 12756143 ~ 12756275 (-)
XLOC_004029 BX530062.1 non-coding upstream 1132252 13482671 ~ 13482787 (-)

Expression


Co-expression Network