Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00007619 |
| length | 1017 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 6 |
| gene id | XLOC_003990 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 12348479 ~ 12350419 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006397 | mRNA processing | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-141216-38 | Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. |
| ensembl_id | ENSDART00000166732 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00007602 | lncRNA | downstream | 128510 | 12218106 ~ 12219969 (-) | False | XLOC_003978 |
| TCONS_00007600 | lncRNA | downstream | 135048 | 12213149 ~ 12213431 (-) | True | XLOC_003977 |
| TCONS_00007594 | lncRNA | downstream | 162335 | 12185854 ~ 12186144 (-) | True | XLOC_003975 |
| TCONS_00007591 | lncRNA | downstream | 182472 | 12165723 ~ 12166007 (-) | True | XLOC_003972 |
| TCONS_00008770 | lncRNA | downstream | 642343 | 11646506 ~ 11706136 (-) | True | XLOC_003962 |
| TCONS_00008771 | lncRNA | upstream | 78964 | 12429383 ~ 12430109 (-) | False | XLOC_003997 |
| TCONS_00008772 | lncRNA | upstream | 78964 | 12429383 ~ 12491279 (-) | True | XLOC_003997 |
| TCONS_00008773 | lncRNA | upstream | 79736 | 12430155 ~ 12465409 (-) | True | XLOC_003998 |
| TCONS_00008774 | lncRNA | upstream | 113281 | 12463700 ~ 12464486 (-) | True | XLOC_004002 |
| TCONS_00007671 | lncRNA | upstream | 383712 | 12734131 ~ 12741136 (-) | False | XLOC_004023 |
| TCONS_00007617 | mRNA | downstream | 13933 | 12332626 ~ 12334546 (-) | False | XLOC_003989 |
| TCONS_00007618 | mRNA | downstream | 14105 | 12333031 ~ 12334374 (-) | True | XLOC_003989 |
| TCONS_00007615 | mRNA | downstream | 25794 | 12321345 ~ 12322685 (-) | True | XLOC_003987 |
| TCONS_00007614 | mRNA | downstream | 46540 | 12300579 ~ 12301939 (-) | True | XLOC_003986 |
| TCONS_00007612 | mRNA | downstream | 60153 | 12286940 ~ 12288326 (-) | True | XLOC_003984 |
| TCONS_00007622 | mRNA | upstream | 11812 | 12362231 ~ 12364122 (-) | False | XLOC_003992 |
| TCONS_00007623 | mRNA | upstream | 11910 | 12362329 ~ 12363941 (-) | True | XLOC_003992 |
| TCONS_00007624 | mRNA | upstream | 27202 | 12377621 ~ 12379541 (-) | False | XLOC_003993 |
| TCONS_00007625 | mRNA | upstream | 27300 | 12377719 ~ 12379359 (-) | True | XLOC_003993 |
| TCONS_00007626 | mRNA | upstream | 42296 | 12392715 ~ 12394682 (-) | False | XLOC_003994 |
| TCONS_00007616 | other | downstream | 24553 | 12323630 ~ 12323926 (-) | True | XLOC_003988 |
| TCONS_00007613 | other | downstream | 58811 | 12289372 ~ 12289668 (-) | True | XLOC_003985 |
| TCONS_00007611 | other | downstream | 94323 | 12253860 ~ 12254156 (-) | True | XLOC_003983 |
| TCONS_00007606 | other | downstream | 115579 | 12229830 ~ 12232900 (-) | False | XLOC_003980 |
| TCONS_00007605 | other | downstream | 127293 | 12220890 ~ 12221186 (-) | True | XLOC_003979 |
| TCONS_00007621 | other | upstream | 840 | 12351259 ~ 12351555 (-) | True | XLOC_003991 |
| TCONS_00007628 | other | upstream | 45099 | 12395518 ~ 12395814 (-) | True | XLOC_003995 |
| TCONS_00007634 | other | upstream | 87665 | 12438084 ~ 12438380 (-) | True | XLOC_004000 |
| TCONS_00007645 | other | upstream | 149547 | 12499966 ~ 12500262 (-) | True | XLOC_004006 |
| TCONS_00007648 | other | upstream | 162547 | 12512966 ~ 12513262 (-) | True | XLOC_004008 |
