RNA id: TCONS_00007602


Basic Information

Item Value
RNA id TCONS_00007602
length 1254
lncRNA type retained_intron
GC content 0.50
exon number 5
gene id XLOC_003978
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12218106 ~ 12220002 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCATCTGATCTCGGCGTCCTTCCTGGCAACTGATTCCCagattattgatattattgattGTTGGATACATCGATTGATCGTCTGCTTCTCCCTTCATTCAGGTTTGACCCTTGTTATCACACTGTGTTTTGTGTTCAGTATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACACATCTGTCATCATCAGACGGGTCCCTGCGGCTGGACTGAAGTCCTCCAACAGAAGATTTGTTGGccATCAAGCTGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgaGAATCTGGCTGAGGCAAAGGCATCAGAGGAGGACAAGCTGAAAGCGGCGATGTACCAGTCCAGTCTGTGCTACTACTCCAGCAGGTGAGCGttcagacactgacaggtttgGTTTGTGAGAAATGTTAGAGCTGATTCTCATGGTTCTGATGTTCATCAGTGAGGCCATGACACTGCTTGGGCTTCTTCCACCCAACTATGTCTGCTTTCACTGTGGGATCCCAGGACACCACATTAGGCACTGCCCCTCTAAAGGGGTAACTGGGTTTTCTAAGCTTATGGTTGCTGTGAACTTGAGCTCTTGTCTCCATCAGTCAGATTGTTTGCTCTGTCGTTTGACTGTCACTCATGAattcacagggcagcagctctgctccACACAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGATGGACGGCAGCGGCAAATACGTCATTCCCATCATAGACGCTGAGGCCTATGCTGCTGAGAAGAAAAAGAGGCCGTCCTTCTCCTGCCAGGCCAAGCCGCTGCCCTTCTCTTCCTCAGCTGGTGCAGCATCTTCAGTCCAGGACGCCAGAGGGAAACGTTCCCGCTCCCCATCTCCACCAGAGACGCACGGAGACCAGAAGAGACCACGTCACTGAGAGACCTTCACCCAAGAGACCTGGAGCCGACGTGAGCACagtgtatatattgtacatagtttatgaataaaactgaataaagattATAGCAGCATAAA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141222-85 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000169553

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007600 lncRNA downstream 4675 12213149 ~ 12213431 (-) True XLOC_003977
TCONS_00007594 lncRNA downstream 31962 12185854 ~ 12186144 (-) True XLOC_003975
TCONS_00007591 lncRNA downstream 52099 12165723 ~ 12166007 (-) True XLOC_003972
TCONS_00008770 lncRNA downstream 511970 11646506 ~ 11706136 (-) True XLOC_003962
TCONS_00007573 lncRNA downstream 512013 11639483 ~ 11706093 (-) False XLOC_003962
TCONS_00008771 lncRNA upstream 209414 12429383 ~ 12430109 (-) False XLOC_003997
TCONS_00008772 lncRNA upstream 209414 12429383 ~ 12491279 (-) True XLOC_003997
TCONS_00008773 lncRNA upstream 210186 12430155 ~ 12465409 (-) True XLOC_003998
TCONS_00008774 lncRNA upstream 243731 12463700 ~ 12464486 (-) True XLOC_004002
TCONS_00007671 lncRNA upstream 514162 12734131 ~ 12741136 (-) False XLOC_004023
TCONS_00007598 mRNA downstream 19192 12190571 ~ 12198914 (-) False XLOC_003976
TCONS_00007595 mRNA downstream 19202 12188120 ~ 12198904 (-) False XLOC_003976
TCONS_00007597 mRNA downstream 19202 12190168 ~ 12198904 (-) False XLOC_003976
TCONS_00007596 mRNA downstream 19341 12188249 ~ 12198765 (-) False XLOC_003976
TCONS_00007599 mRNA downstream 24020 12190572 ~ 12194086 (-) True XLOC_003976
TCONS_00007607 mRNA upstream 9861 12229830 ~ 12232929 (-) False XLOC_003980
TCONS_00007608 mRNA upstream 10265 12230234 ~ 12232769 (-) True XLOC_003980
TCONS_00007609 mRNA upstream 21967 12241936 ~ 12243295 (-) True XLOC_003981
TCONS_00007610 mRNA upstream 31871 12251840 ~ 12252838 (-) True XLOC_003982
TCONS_00007612 mRNA upstream 66971 12286940 ~ 12288326 (-) True XLOC_003984
TCONS_00007593 other downstream 48452 12169361 ~ 12169654 (-) True XLOC_003974
TCONS_00007592 other downstream 49808 12168002 ~ 12168298 (-) True XLOC_003973
TCONS_00007590 other downstream 56151 12161658 ~ 12161955 (-) True XLOC_003971
TCONS_00007587 other downstream 113190 12096199 ~ 12104916 (-) False XLOC_003969
TCONS_00007578 other downstream 347135 11845601 ~ 11870971 (-) False XLOC_003964
TCONS_00007605 other upstream 921 12220890 ~ 12221186 (-) True XLOC_003979
TCONS_00007606 other upstream 9861 12229830 ~ 12232900 (-) False XLOC_003980
TCONS_00007611 other upstream 33891 12253860 ~ 12254156 (-) True XLOC_003983
TCONS_00007613 other upstream 69403 12289372 ~ 12289668 (-) True XLOC_003985
TCONS_00007616 other upstream 103661 12323630 ~ 12323926 (-) True XLOC_003988

Expression Profile

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