RNA id: TCONS_00007594


Basic Information

Item Value
RNA id TCONS_00007594
length 291
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id XLOC_003975
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12185854 ~ 12186144 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGGGTTCAGTGGCGCGCGCCTGTAATCCAAGCTACTGGGAGGCAGTGGCTGCGGatcgcttgagctcagggcttctggACTGCAGTGGACTATGTTGATCGGGTGTCCGCGCTAAGTTCGGTATCGATATGGTGCTCCTGGGGGAGCTCGGGACCACCAGGTCGTCTAAAGAGGGGTGAATCGGTCCAGGTCGGAGACGAAGCAGGTCAAAGTCCCCGTGCCGATCAGTAGTGGGATCGCACCTGTGAATAGACACTGCAGTGCAGCCTGAGAGACGCagacttttgtt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007591 lncRNA downstream 19847 12165723 ~ 12166007 (-) True XLOC_003972
TCONS_00008770 lncRNA downstream 479718 11646506 ~ 11706136 (-) True XLOC_003962
TCONS_00007573 lncRNA downstream 479761 11639483 ~ 11706093 (-) False XLOC_003962
TCONS_00007574 lncRNA downstream 479770 11639653 ~ 11706084 (-) False XLOC_003962
TCONS_00008769 lncRNA downstream 583974 11594994 ~ 11601880 (-) True XLOC_003960
TCONS_00007600 lncRNA upstream 27005 12213149 ~ 12213431 (-) True XLOC_003977
TCONS_00007602 lncRNA upstream 31962 12218106 ~ 12219969 (-) False XLOC_003978
TCONS_00008771 lncRNA upstream 243239 12429383 ~ 12430109 (-) False XLOC_003997
TCONS_00008772 lncRNA upstream 243239 12429383 ~ 12491279 (-) True XLOC_003997
TCONS_00008773 lncRNA upstream 244011 12430155 ~ 12465409 (-) True XLOC_003998
TCONS_00007589 mRNA downstream 27442 12108355 ~ 12158412 (-) True XLOC_003970
TCONS_00007588 mRNA downstream 80937 12096199 ~ 12104917 (-) True XLOC_003969
TCONS_00007586 mRNA downstream 134049 12011180 ~ 12051805 (-) True XLOC_003968
TCONS_00007585 mRNA downstream 134571 12009735 ~ 12051283 (-) False XLOC_003968
TCONS_00007584 mRNA downstream 177853 11983465 ~ 12008001 (-) True XLOC_003967
TCONS_00007595 mRNA upstream 1976 12188120 ~ 12198904 (-) False XLOC_003976
TCONS_00007596 mRNA upstream 2105 12188249 ~ 12198765 (-) False XLOC_003976
TCONS_00007597 mRNA upstream 4024 12190168 ~ 12198904 (-) False XLOC_003976
TCONS_00007598 mRNA upstream 4427 12190571 ~ 12198914 (-) False XLOC_003976
TCONS_00007599 mRNA upstream 4428 12190572 ~ 12194086 (-) True XLOC_003976
TCONS_00007593 other downstream 16200 12169361 ~ 12169654 (-) True XLOC_003974
TCONS_00007592 other downstream 17556 12168002 ~ 12168298 (-) True XLOC_003973
TCONS_00007590 other downstream 23899 12161658 ~ 12161955 (-) True XLOC_003971
TCONS_00007587 other downstream 80938 12096199 ~ 12104916 (-) False XLOC_003969
TCONS_00007578 other downstream 314883 11845601 ~ 11870971 (-) False XLOC_003964
TCONS_00007605 other upstream 34746 12220890 ~ 12221186 (-) True XLOC_003979
TCONS_00007606 other upstream 43686 12229830 ~ 12232900 (-) False XLOC_003980
TCONS_00007611 other upstream 67716 12253860 ~ 12254156 (-) True XLOC_003983
TCONS_00007613 other upstream 103228 12289372 ~ 12289668 (-) True XLOC_003985
TCONS_00007616 other upstream 137486 12323630 ~ 12323926 (-) True XLOC_003988

Expression Profile

//