XLOC_003969 (mrpl45)


Basic Information

Item Value
gene id XLOC_003969
gene name mrpl45
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12096199 ~ 12104917 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007587
ACTAATTTTTCGTGCACGAAGGAGTCCTGAAGGAAGATGGCGGCCTCCATATGTAGGACGTTGAAATGCCTTCAACCAACATCATGTCAAAATATAAAGTACGGCTCGTCTCTGCTGGATGTCCGGCTGTGGCAGGCAGTGCTTCGGGTTCCCGTCCGGACAAAAAGACGCTTGTTCATTCCTCCGTCAGCAAACATTAAATCGAAGACCCAGGACGAGCAGGAGAAAAAAGCCCGAGCTGCCGGTGTGGTGGTCCGACAAGAGTACATGGAGAGACCCATCAACATCTCATGCACAGCTGGCGATTCGTAAAATAAAGGATTATGACTCCACATTCACCTCTAAAGAATTTCCAGGAATAGGCCAGCAGATCTTCATAGATGCTCATGCAGCACTCACAGAATTTAACAAAGAAAAACTTCATTCACTGGTGACGGAGAGATGTTACCCTgagATGGTTCGGGGGAATCGTTATAAGACTCTGCGTTGGCGCTTTATTGAGTCTCTAGAGCCTCCTCGACTTGTTCAAGCTCGATGTCCTGACATGATCAGCAAAGGCAATCTCTATGGTCAGGTCACTGTCCGCATGCATTCTAGACAGACGCTGGCCATCTATGACCGTTTTGGCCGGCTGATGCTCGGAGATGAGGAAGAGCCCAGAGATGTCCTGGAGTATCTGGTGATGGAGAGACATCTGGTGAATCCTTACGGGCGCTGGAGGCTTCATGGCAAGATTGTTCCAGCATGGGCTCCACCAAAAGATCCCATTATTAAGACCGTTATGATCCCTGGACCCAAGCTGAAGTCCGGTGAACAGTTTGAAGATCTGAATTATCAGATACCGAAGCCAAATGCAGTTCAGTGGCATAAATAATGCCTGTACAGATCAATTCCCagttatcaaaataaataatgctgtatttataa
>TCONS_00007588
CACTAATTTTTCGTGCACGAAGGAGTCCTGAAGGAAGATGGCGGCCTCCATATGTAGGACGTTGAAATGCCTTCAACCAACATCATGTCAAAATATAAAGTACGGCTCGTCTCTGCTGGATGTCCGGCTGTGGCAGGCAGTGCTTCGGGTTCCCGTCCGGACAAAAAGACGCTTGTTCATTCCTCCGTCAGCAAACATTAAATCGAAGACCCAGGACGAGCAGGAGAAAAAAGCCCGAGCTGCCGGTGTGGTGGTCCGACAAGAGTACATGGAGAGACCCATCAACATCTCATGCACAGcggGCATCTATGATCCATATGTTCCTCCTGAAGGAGATGCTCGTCTCTCCACTCTCACTAAAGAAGGTCTGAAGCAGCGTACAGAGCAGCTCCGGCAGACCGCAGCGTCACAGCTGGCGATTCGTAAAATAAAGGATTATGACTCCACATTCACCTCTAAAGAATTTCCAGGAATAGGCCAGCAGATCTTCATAGATGCTCATGCAGCACTCACAGAATTTAACAAAGAAAAACTTCATTCACTGGTGACGGAGAGATGTTACCCTgagATGGTTCGGGGGAATCGTTATAAGACTCTGCGTTGGCGCTTTATTGAGTCTCTAGAGCCTCCTCGACTTGTTCAAGCTCGATGTCCTGACATGATCAGCAAAGGCAATCTCTATGGTCAGGTCACTGTCCGCATGCATTCTAGACAGACGCTGGCCATCTATGACCGTTTTGGCCGGCTGATGCTCGGAGATGAGGAAGAGCCCAGAGATGTCCTGGAGTATCTGGTGATGGAGAGACATCTGGTGAATCCTTACGGGCGCTGGAGGCTTCATGGCAAGATTGTTCCAGCATGGGCTCCACCAAAAGATCCCATTATTAAGACCGTTATGATCCCTGGACCCAAGCTGAAGTCCGGTGAACAGTTTGAAGATCTGAATTATCAGATACCGAAGCCAAATGCAGTTCAGTGGCATAAATAATGCCTGTACAGATCAATTCCCagttatcaaaataaataatgctgtatttataa

Function

symbol description
mrpl45 Predicted to be located in ribosome. Predicted to be active in mitochondrion. Orthologous to human MRPL45 (mitochondrial ribosomal protein L45).

GO:

id name namespace
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040426-1041 Predicted to be located in ribosome. Predicted to be active in mitochondrion. Orthologous to human MRPL45 (mitochondrial ribosomal protein L45).

Ensembl:

ensembl_id ENSDARG00000044942

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007587 False 927 nonsense_mediated_decay 0.47 8 12096199 12104916
TCONS_00007588 True 1041 mRNA 0.48 8 12096199 12104917

Neighbor

gene id symbol gene type direction distance location
XLOC_003968 socs7 coding downstream 44394 12009735 ~ 12051805 (-)
XLOC_003967 sp2 coding downstream 88198 11983465 ~ 12008001 (-)
XLOC_003966 abcc10 coding downstream 131166 11911399 ~ 11965033 (-)
XLOC_003965 si:ch211-69b7.6 coding downstream 185974 11891580 ~ 11910225 (-)
XLOC_003964 wipf2a coding downstream 206198 11844123 ~ 11890001 (-)
XLOC_003970 npepps coding upstream 3438 12108355 ~ 12158412 (-)
XLOC_003972 NA coding upstream 60806 12165723 ~ 12166007 (-)
XLOC_003975 NA coding upstream 80937 12185854 ~ 12186144 (-)
XLOC_003976 krt95 coding upstream 83203 12188120 ~ 12198914 (-)
XLOC_003977 NA coding upstream 108232 12213149 ~ 12213431 (-)
XLOC_003954 BX324177.9 misc downstream 648714 11447189 ~ 11447485 (-)
XLOC_003953 BX324177.8 misc downstream 650214 11445689 ~ 11445985 (-)
XLOC_003952 BX324177.23 misc downstream 658012 11437891 ~ 11438187 (-)
XLOC_003951 BX324177.16 misc downstream 660456 11435447 ~ 11435743 (-)
XLOC_003950 BX324177.18 misc downstream 669025 11426878 ~ 11427174 (-)
XLOC_003971 BX469912.7 misc upstream 56741 12161658 ~ 12161955 (-)
XLOC_003973 BX469912.11 misc upstream 63085 12168002 ~ 12168298 (-)
XLOC_003974 BX469912.4 misc upstream 64444 12169361 ~ 12169654 (-)
XLOC_003979 BX469912.8 misc upstream 115973 12220890 ~ 12221186 (-)
XLOC_003983 FO904934.1 misc upstream 148943 12253860 ~ 12254156 (-)
XLOC_003962 CR848705.2 non-coding downstream 390063 11639483 ~ 11706136 (-)
XLOC_003960 NA non-coding downstream 494319 11594994 ~ 11601880 (-)
XLOC_003955 NA non-coding downstream 644264 11451660 ~ 11451935 (-)
XLOC_003946 NA non-coding downstream 691309 11404596 ~ 11404890 (-)
XLOC_003941 NA non-coding downstream 739012 11356893 ~ 11357187 (-)
XLOC_003997 NA non-coding upstream 324466 12429383 ~ 12491279 (-)
XLOC_003998 NA non-coding upstream 325238 12430155 ~ 12465409 (-)

Expression


Co-expression Network