XLOC_003967 (sp2)


Basic Information

Item Value
gene id XLOC_003967
gene name sp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 11983465 ~ 12008001 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007584
AGAAAAACGACGTCTTTTCATTAGTCAGAACAAATGTCAATCAGGCAAAAACTGTTTTCTGATTGGTTATCACTTTTAGCTCTAGATGATTGACAAGTAACCTGATTGGCCAGTAGACCCCGGTGGGGCGGTATCTTTTGTGGGCTCTTCAAGGCTTCACGGAGAGTGAATGTCGTCATGAGCGATCAAAAGGACAGTATGGCCACCACTGTCGCAGTCAGTCCCAGTGAATATCTTCAGCCCTCCACCACCACTTCTCAAGACTCACAGCCCTCCCCGTTGGCGCTCTTGGCAGCTACTTGCAGTAAGATTGGGCCACCTGCTGCCCAGGCTCCAGTCAGCACACCACCATCTCAGCCAACCACACGCCGTCTGCACCCGATTAAACCCGCCCCCATTGCTCCAGCTCCACCCAAAAACCTGGGCTTCCTCTCAGCCAAAGGGAATATAATCCAGCTGCCCGCAGGACTTGGCTCATCAGGGGCCAGTCCCATTGTCTTCACTTTTCAGAGCCCTTCACGTCCAGCAGGCACATCCACTGCTAACTTCCAGTACCAAGTGATTCCTCAGTTCCAGGGCTCTCAGACCATTCAGATGATGCCTCAGGGAGGACAGATCCAAATCATCCCAGGAACCAACCAGGCCATAATCACCTCACCCGTCACAGTTCAGGCTGCCACACCAACTGCTCCACCTCTGGCCCCGGCCCCGGTCCCCCAGCATAAAACGGTGGCGATCAAGCCGTCCACCCAAAAACGGCGGCAGAATAATGCTAGCGTGAATGCTAACATTGTGCGACTCCCCAGCGGACTCACGCTTCCTCTCAATGTGACCACTGGTGATGTCGGAGGAGCGCAGGTTCTAACGGAGACTGCAGCAGCTCCAGTGAAGCCTAAAAGGGGAAGGAAAAGACAGGTGGCTATAGCTGCGCCAGCACCTGCCCCGCAACCAGCTTCACCTCCACCTGTAGCTGAGCAGGTCGAGGCCTTGCTGATAGAGACCACAGCTGACAACATTATTCAGGCAGGAAATAATCTCCTGATCGTGCAGAATCCAGGGGGGAGTCAGCCTGCTGTGGTGCAGCAAGTGCAGTTGCTTCAGCAGAAATCAGACCAGCAGGTCGTTCAGATCCCCCCACAGGCTCTAAAAGTGGTACAGGCTGCATCTGCTACACTTCCCCCTGTCCCACAGAGACAGACAGTCACGCCCAGTGTCCAGGTGTCTCCTCCAGAACCCACACAGGTGCTGATTAAAACAGCCTCGGGGGAATGGCAGGCTGTACAGATACAGGAAACTACTGTTACGACTCCAACAACACCCACCAGCACACCAACACCTGCGGTGGTCACAAAAAAAGTTCAAACAGGAACGCGGAAAGAAAGGACTCTACCTAAAATCGCCCCGGCTGGAGGGGGTTTGATAACACTGAACGCAGCTCAGTTAGCATCTGCTGCTCAGGCTGTGCAGACCATCAACATCAACGGAGTCCAGGTACAGGGGGTTCCTGTGACCATCACCAATGCTGGGGGCCAGCAGCATCTGACAGTGCAGACTGTTCCCAGCGCAGGTCTGCAGCTGGGCAGTGTGCAGACGCAGACACAGACCATGCAGATAGAGCAGACGCAGACACTCGCTCTGGAGCTGCAGACTCAGCCAGGAGAGAAGAAACGGCGCATGGCCTGCACATGCCCTAACTGCAAGGACGCAGAAAAGAAGCCGGGAGAAGTGGGGAAAAGAAAACACATCTGCCACATAGCAGGCTGTGAAAAGACCTTTCGAAAGACTTCCCTGCTGCGAGCGCATGTCCGACTGCACACAGGAGAGAGACCTTTTGTCTGCAACTGGGTGTTCTGTGGAAAACGATTCACGCGCAGTGACGAGCTCCAGCGACACGCCAGGACACACACGGGTGACAAACGTTTTGAGTGCAATAAATGTCAGAAACGTTTCATGCGGAGCGACCACCTCACAAAGCATTACAAAACACACATCAACACAAAGAGCCTGTGAACAATGTCTTTCGTGAGATTTCAAGAACTTCATGGGGgggtgaaaaaagaaaaacaagtgtTCCCTGGGCTTGAGGGATGGGCGGATATGGAAGTAAATCCCCATTCACGTGTACGACGTAGCCCTGGAAATTCACCTGTTAATACCAAGGCCTCGCCCTCATCTTCAGAGAAAGGCTCTCAGGCCGGAAAGTGTGACCCGCACTTAAAACTCATGAAGAACATGGATGCCGGTTGTGTCTTGGTGGTTTCCTCTGATATACAGAGCAGAACAAAGCACCAACAGACACTCCAGCCAAAAAAAGCAAGAAAAGAAGTTACTTCCcccttttatttacagtttttctcattgTTTTAGCTTCACCATCCCCCCCTCACATGAAGTGTAGCAGTTATGGGCAGTGTTTCTTAGCTTttattgtgtaaatgtttgttttcatacatacaaacatacatttgtacatactatggacaatttgaaTACAAAAGCGATGCTTTGGACAAACTCTTTGACccagttaaattattattttctgttgctttttattttatttagaattttaaatgGACGCTTGAATTTGGTTTTAATAATATTAGAGGTTTTGGATTTGACATGCTTGTCGATGGTTTGACAATCATGTTGTATATAGAAGAGGGTGAATATCTTCAGACTTGCTACACGTTTAAaggaataatttatttaaaaaaagatgttgTAACgtatgcggtgtgtgtgtgtgtgtgagcgcgtatgtgtgtgtgtgtctgatgaaGATTGCTTATGTCCATCAAAATCCCCCAAAAAAGTactcatgtttattttttgatgtaaagaAGGACTAAAATCTCACAAAGAAGGATGCGATGTGATTGTTTGCaatgttttaccatgtttttttcgATTTATTCAAGGTACGTGTAAAGGAAATGAGGAATTTAATGCTTCTTTGCAGTCAGTCATTCCGCTTGAGTTCTCATCCAAGTTTTTGTCCAAGCTCTCTTAAAGAGGCCTTAAGAGGAAAAAGGAAAGGGTGcttatgtatgtttgtatattgATTTTGTTGTATTTGGATGTAAAATGTAGGATAATTGTTACACAAATGTGTATTGGCTGTTGTTGCCAG

Function

symbol description
sp2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in intestine; kidney; liver; ovary; and spleen. Orthologous to human SP2 (Sp2 transcription factor).

GO:

id name namespace
GO:0035264 multicellular organism growth biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-080410-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in intestine; kidney; liver; ovary; and spleen. Orthologous to human SP2 (Sp2 transcription factor).

Ensembl:

ensembl_id ENSDARG00000076763

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007584 True 3133 mRNA 0.48 8 11983465 12008001

Neighbor

gene id symbol gene type direction distance location
XLOC_003966 abcc10 coding downstream 18432 11911399 ~ 11965033 (-)
XLOC_003965 si:ch211-69b7.6 coding downstream 73240 11891580 ~ 11910225 (-)
XLOC_003964 wipf2a coding downstream 93464 11844123 ~ 11890001 (-)
XLOC_003963 cdc6 coding downstream 190699 11781973 ~ 11792766 (-)
XLOC_003962 CR848705.2 coding downstream 277329 11639483 ~ 11706136 (-)
XLOC_003968 socs7 coding upstream 1734 12009735 ~ 12051805 (-)
XLOC_003969 mrpl45 coding upstream 88198 12096199 ~ 12104917 (-)
XLOC_003970 npepps coding upstream 100354 12108355 ~ 12158412 (-)
XLOC_003972 NA coding upstream 157722 12165723 ~ 12166007 (-)
XLOC_003975 NA coding upstream 177853 12185854 ~ 12186144 (-)
XLOC_003954 BX324177.9 misc downstream 535980 11447189 ~ 11447485 (-)
XLOC_003953 BX324177.8 misc downstream 537480 11445689 ~ 11445985 (-)
XLOC_003952 BX324177.23 misc downstream 545278 11437891 ~ 11438187 (-)
XLOC_003951 BX324177.16 misc downstream 547722 11435447 ~ 11435743 (-)
XLOC_003950 BX324177.18 misc downstream 556291 11426878 ~ 11427174 (-)
XLOC_003971 BX469912.7 misc upstream 153657 12161658 ~ 12161955 (-)
XLOC_003973 BX469912.11 misc upstream 160001 12168002 ~ 12168298 (-)
XLOC_003974 BX469912.4 misc upstream 161360 12169361 ~ 12169654 (-)
XLOC_003979 BX469912.8 misc upstream 212889 12220890 ~ 12221186 (-)
XLOC_003983 FO904934.1 misc upstream 245859 12253860 ~ 12254156 (-)
XLOC_003960 NA non-coding downstream 381585 11594994 ~ 11601880 (-)
XLOC_003955 NA non-coding downstream 531530 11451660 ~ 11451935 (-)
XLOC_003946 NA non-coding downstream 578575 11404596 ~ 11404890 (-)
XLOC_003941 NA non-coding downstream 626278 11356893 ~ 11357187 (-)
XLOC_003977 NA non-coding upstream 205148 12213149 ~ 12213431 (-)
XLOC_003997 NA non-coding upstream 421382 12429383 ~ 12491279 (-)
XLOC_003998 NA non-coding upstream 422154 12430155 ~ 12465409 (-)

Expression


Co-expression Network