XLOC_003977


Basic Information

Item Value
gene id XLOC_003977
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12213149 ~ 12213431 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007600
GCTGTGTTCAGTGGCGTGTGCCTGTTATCCAAGCTGCTGCGGGTGTGGATCGCTTGAGCTTAGGGCTTCTGGACTGCAGTGGACTATATTGATCCAGTGTCCACGCTAAGTTTGGTATCAATATGGTACTCCTCAGGGAGCTCAAAACCACCAGGTCGTGTAAGGAAGGGTGAACTGGCCAAGGTTGTAGACGGAGCAGGTCAAATCCCCTGTGCTGATCAGTAGTGGGATCACACCTGTGAATGGACACTGCAGTTCAGCCAGAGTGATGCAGACTTTTGGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007600 True 283 lncRNA 0.52 1 12213149 12213431

Neighbor

gene id symbol gene type direction distance location
XLOC_003976 krt95 coding downstream 14235 12188120 ~ 12198914 (-)
XLOC_003975 NA coding downstream 27005 12185854 ~ 12186144 (-)
XLOC_003972 NA coding downstream 47142 12165723 ~ 12166007 (-)
XLOC_003970 npepps coding downstream 54737 12108355 ~ 12158412 (-)
XLOC_003969 mrpl45 coding downstream 108232 12096199 ~ 12104917 (-)
XLOC_003978 si:ch211-156l18.6 coding upstream 4675 12218106 ~ 12220002 (-)
XLOC_003980 zgc:174357 coding upstream 16399 12229830 ~ 12232929 (-)
XLOC_003981 zgc:174354 coding upstream 28505 12241936 ~ 12243295 (-)
XLOC_003982 si:ch211-156l18.4 coding upstream 38409 12251840 ~ 12252838 (-)
XLOC_003984 zgc:174356 coding upstream 73509 12286940 ~ 12288326 (-)
XLOC_003974 BX469912.4 misc downstream 43495 12169361 ~ 12169654 (-)
XLOC_003973 BX469912.11 misc downstream 44851 12168002 ~ 12168298 (-)
XLOC_003971 BX469912.7 misc downstream 51194 12161658 ~ 12161955 (-)
XLOC_003954 BX324177.9 misc downstream 765664 11447189 ~ 11447485 (-)
XLOC_003953 BX324177.8 misc downstream 767164 11445689 ~ 11445985 (-)
XLOC_003979 BX469912.8 misc upstream 7459 12220890 ~ 12221186 (-)
XLOC_003983 FO904934.1 misc upstream 40429 12253860 ~ 12254156 (-)
XLOC_003985 CABZ01022564.3 misc upstream 75941 12289372 ~ 12289668 (-)
XLOC_003988 LO017719.2 misc upstream 110199 12323630 ~ 12323926 (-)
XLOC_003991 BX000700.22 misc upstream 137828 12351259 ~ 12351555 (-)
XLOC_003962 CR848705.2 non-coding downstream 507013 11639483 ~ 11706136 (-)
XLOC_003960 NA non-coding downstream 611269 11594994 ~ 11601880 (-)
XLOC_003955 NA non-coding downstream 761214 11451660 ~ 11451935 (-)
XLOC_003997 NA non-coding upstream 215952 12429383 ~ 12491279 (-)
XLOC_003998 NA non-coding upstream 216724 12430155 ~ 12465409 (-)
XLOC_004002 NA non-coding upstream 250269 12463700 ~ 12464486 (-)
XLOC_004024 CR450764.5 non-coding upstream 542712 12756143 ~ 12756275 (-)
XLOC_004029 BX530062.1 non-coding upstream 1269240 13482671 ~ 13482787 (-)

Expression


Co-expression Network