XLOC_003981 (zgc:174354)


Basic Information

Item Value
gene id XLOC_003981
gene name zgc:174354
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12241936 ~ 12243295 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007609
ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACATGTCGGTCATCATCAGACGGGTCCCTGCGGCAGGACTGAAGTCATCAAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCATAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGA

Function

symbol description
zgc:174354 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080218-8 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000112443

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007609 True 525 mRNA 0.52 5 12241936 12243295

Neighbor

gene id symbol gene type direction distance location
XLOC_003980 zgc:174357 coding downstream 9007 12229830 ~ 12232929 (-)
XLOC_003978 si:ch211-156l18.6 coding downstream 21934 12218106 ~ 12220002 (-)
XLOC_003977 NA coding downstream 28505 12213149 ~ 12213431 (-)
XLOC_003976 krt95 coding downstream 43022 12188120 ~ 12198914 (-)
XLOC_003975 NA coding downstream 55792 12185854 ~ 12186144 (-)
XLOC_003982 si:ch211-156l18.4 coding upstream 8545 12251840 ~ 12252838 (-)
XLOC_003984 zgc:174356 coding upstream 43645 12286940 ~ 12288326 (-)
XLOC_003986 CABZ01022564.2 coding upstream 57284 12300579 ~ 12301939 (-)
XLOC_003987 zgc:174355 coding upstream 78050 12321345 ~ 12322685 (-)
XLOC_003989 zgc:91850 coding upstream 89331 12332626 ~ 12334546 (-)
XLOC_003979 BX469912.8 misc downstream 20750 12220890 ~ 12221186 (-)
XLOC_003974 BX469912.4 misc downstream 72282 12169361 ~ 12169654 (-)
XLOC_003973 BX469912.11 misc downstream 73638 12168002 ~ 12168298 (-)
XLOC_003971 BX469912.7 misc downstream 79981 12161658 ~ 12161955 (-)
XLOC_003954 BX324177.9 misc downstream 794451 11447189 ~ 11447485 (-)
XLOC_003983 FO904934.1 misc upstream 10565 12253860 ~ 12254156 (-)
XLOC_003985 CABZ01022564.3 misc upstream 46077 12289372 ~ 12289668 (-)
XLOC_003988 LO017719.2 misc upstream 80335 12323630 ~ 12323926 (-)
XLOC_003991 BX000700.22 misc upstream 107964 12351259 ~ 12351555 (-)
XLOC_003995 BX000700.6 misc upstream 152223 12395518 ~ 12395814 (-)
XLOC_003972 NA non-coding downstream 75929 12165723 ~ 12166007 (-)
XLOC_003962 CR848705.2 non-coding downstream 535800 11639483 ~ 11706136 (-)
XLOC_003960 NA non-coding downstream 640056 11594994 ~ 11601880 (-)
XLOC_003997 NA non-coding upstream 186088 12429383 ~ 12491279 (-)
XLOC_003998 NA non-coding upstream 186860 12430155 ~ 12465409 (-)
XLOC_004002 NA non-coding upstream 220405 12463700 ~ 12464486 (-)
XLOC_004024 CR450764.5 non-coding upstream 512848 12756143 ~ 12756275 (-)
XLOC_004029 BX530062.1 non-coding upstream 1239376 13482671 ~ 13482787 (-)

Expression


Co-expression Network