RNA id: TCONS_00007609


Basic Information

Item Value
RNA id TCONS_00007609
length 525
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_003981
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 12241936 ~ 12243295 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTTGTGTTCATTACAGGTTTCAGAGTCGACTCACCTACGACTCGCTCCAGTTTGAGGGCCTCAACATCACTGTGGGAGAGCTGAAGCGGCAGATCATGAGGCGCGAGAGGCTGAAGTTCTGCCAGCTGAAGATCAGCAAAGCCCAAACTGATGAAGaataCACAGATGATGATGCTCTCATCCCCAAAAACATGTCGGTCATCATCAGACGGGTCCCTGCGGCAGGACTGAAGTCATCAAACAGAAGATTTGTTGGacatcaagctGGACCATCAGCTAAATCTTCTCAAACAGGTGATTCTTCACTCCTCTCACTGGAGCAGCTGTTGAAGactgagaatctggctgaggcaaaggcatcagaggaggacaagctaaaagcggtgatgtaccagtccagtctgtgctactactccagcagggcagcagctctgctccGCATAAGCGCATCCggaggagcacagggattccCCGCAGCTTCCTGTTGGAGGTGGACGACCCAAACCGAAAGGGAGTCATGA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0016567 protein ubiquitination biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080218-8 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within mRNA processing. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000183024

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007602 lncRNA downstream 21967 12218106 ~ 12219969 (-) False XLOC_003978
TCONS_00007600 lncRNA downstream 28505 12213149 ~ 12213431 (-) True XLOC_003977
TCONS_00007594 lncRNA downstream 55792 12185854 ~ 12186144 (-) True XLOC_003975
TCONS_00007591 lncRNA downstream 75929 12165723 ~ 12166007 (-) True XLOC_003972
TCONS_00008770 lncRNA downstream 535800 11646506 ~ 11706136 (-) True XLOC_003962
TCONS_00008771 lncRNA upstream 186088 12429383 ~ 12430109 (-) False XLOC_003997
TCONS_00008772 lncRNA upstream 186088 12429383 ~ 12491279 (-) True XLOC_003997
TCONS_00008773 lncRNA upstream 186860 12430155 ~ 12465409 (-) True XLOC_003998
TCONS_00008774 lncRNA upstream 220405 12463700 ~ 12464486 (-) True XLOC_004002
TCONS_00007671 lncRNA upstream 490836 12734131 ~ 12741136 (-) False XLOC_004023
TCONS_00007607 mRNA downstream 9007 12229830 ~ 12232929 (-) False XLOC_003980
TCONS_00007608 mRNA downstream 9167 12230234 ~ 12232769 (-) True XLOC_003980
TCONS_00007603 mRNA downstream 21934 12218106 ~ 12220002 (-) False XLOC_003978
TCONS_00007601 mRNA downstream 22005 12218106 ~ 12219931 (-) False XLOC_003978
TCONS_00007604 mRNA downstream 22107 12218514 ~ 12219829 (-) True XLOC_003978
TCONS_00007610 mRNA upstream 8545 12251840 ~ 12252838 (-) True XLOC_003982
TCONS_00007612 mRNA upstream 43645 12286940 ~ 12288326 (-) True XLOC_003984
TCONS_00007614 mRNA upstream 57284 12300579 ~ 12301939 (-) True XLOC_003986
TCONS_00007615 mRNA upstream 78050 12321345 ~ 12322685 (-) True XLOC_003987
TCONS_00007617 mRNA upstream 89331 12332626 ~ 12334546 (-) False XLOC_003989
TCONS_00007606 other downstream 9036 12229830 ~ 12232900 (-) False XLOC_003980
TCONS_00007605 other downstream 20750 12220890 ~ 12221186 (-) True XLOC_003979
TCONS_00007593 other downstream 72282 12169361 ~ 12169654 (-) True XLOC_003974
TCONS_00007592 other downstream 73638 12168002 ~ 12168298 (-) True XLOC_003973
TCONS_00007590 other downstream 79981 12161658 ~ 12161955 (-) True XLOC_003971
TCONS_00007611 other upstream 10565 12253860 ~ 12254156 (-) True XLOC_003983
TCONS_00007613 other upstream 46077 12289372 ~ 12289668 (-) True XLOC_003985
TCONS_00007616 other upstream 80335 12323630 ~ 12323926 (-) True XLOC_003988
TCONS_00007621 other upstream 107964 12351259 ~ 12351555 (-) True XLOC_003991
TCONS_00007628 other upstream 152223 12395518 ~ 12395814 (-) True XLOC_003995

Expression Profile

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